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Protein Overview: gi|15231173

General Information:
Name(s) found: gi|15231173 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|15231173|ref|NP_190795.1| ATP binding / RNA polymerase II transcription factor [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 364 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDVKVEMKV RKNENEALET GLAERSMLLM KAPSLVASSL QSHSFPDDPY RPDDPYRPDA  60
   61 KVILGVDPLA HEDEGTQLFR VSSNHSGKFH PLRNLLLHSL KFHGFGEMGF LSLEISSGPH 120
  121 FDHEIPCNLR IGLLSMNFLA RHLNYEFLGV KHGNSFALQF VMELARADSG NMPRRYTLDM 180
  181 SKDFIPMNVF CESSDDFGSL GEEFSIGMFI YSPGKMSVEG KIKNKFDMRP HNENIESYGR 240
  241 LCRERTNKYM GKNRQIQVID NARGMHMRPM PGMIIPTAAP EKKKLTNRTS EMKRTRRDRR 300
  301 EMEEVMFNLF ERQSNWTLRL LIQETDQPEQ FLKDLLKDLC IYNNKGSNQG TYELKPEYKK 360
  361 ATQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] deduced N/A No confident structure predictions are available.
    2 View Details [168..234] PSI-BLAST 12.045757 TFIIF beta subunit, Rap30
    3 View Details [235..364] PSI-BLAST 29.0 DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle