| Protein: | gi|15231173 |
| Organism: | Arabidopsis thaliana |
| Length: | 364 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231173.
| Description | E-value | Query Range |
Subject Range |
|
|
531.0 | [0..1] | [364..1] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 MEDVKVEMKV RKNENEALET GLAERSMLLM KAPSLVASSL QSHSFPDDPY RPDDPYRPDA 60
61 KVILGVDPLA HEDEGTQLFR VSSNHSGKFH PLRNLLLHSL KFHGFGEMGF LSLEISSGPH 120
121 FDHEIPCNLR IGLLSMNFLA RHLNYEFLGV KHGNSFALQF VMELARA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [168-234] |
1 11 21 31 41 51
| | | | | |
1 DSGNMPRRYT LDMSKDFIPM NVFCESSDDF GSLGEEFSIG MFIYSPGKMS VEGKIKNKFD 60
61 MRPHNEN
|
| Detection Method: | |
| Confidence: | 12.045757 |
| Match: | 1f3uA |
| Description: | TFIIF beta subunit, Rap30 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [235-364] |
1 11 21 31 41 51
| | | | | |
1 IESYGRLCRE RTNKYMGKNR QIQVIDNARG MHMRPMPGMI IPTAAPEKKK LTNRTSEMKR 60
61 TRRDRREMEE VMFNLFERQS NWTLRLLIQE TDQPEQFLKD LLKDLCIYNN KGSNQGTYEL 120
121 KPEYKKATQE
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 1bbyA |
| Description: | DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
