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Protein Overview: PUB30_ARATH

General Information:
Name(s) found: PUB30_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18408953|ref|NP_566927.1| U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|122163922|sp|Q058P4.1|PUB30_ARATH RecName: Full=U-box domain-containing protein 30; AltName: Full=Plant U-box protein 30 [NCBI NR]
  • gi|115646761|gb|ABJ17109.1| At3g49810 [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1 [Swiss-Prot]
  • U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr3:18485921-18487267 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g49810 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr3:18474936-18476282 REVERSE LENGTH=448 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 448 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD  60
   61 LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL GHLTCPTTMQ ELWDDTVTPN 120
  121 KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM 180
  181 ARKTVVEEGG VSVISSLLGP FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML 240
  241 NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP 300
  301 ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP 360
  361 YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG LAAKLLLVIQ SGCDAALKQR 420
  421 SAELLKLCSL HYSDTMFISK CKLTRTIQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..448] PSI-BLAST 43.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle