YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|30680075, gi|...

General Information:
Name(s) found: gi|30680075 [NCBI NR]
gi|119360081 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 323 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: pseudouridine synthesis [IEA]
    tRNA processing [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCVTPALPP SLFTNGYLSS PQNISMTNLN SSVKVSDSGA YKWRLVIAYD GTRFAGWQYQ  60
   61 ESPPTIQSML EKALIQITEL GRKELQLIGA GRTDAGVHAW GQVAHFVTPF NYTSLDSFHA 120
  121 ALNGLLPKDI RVRELSAAVP EFHARFSASS KVYRYQIYND TFMDPFQRHW AYHCAYKLNA 180
  181 SKMREAANLF VGKHDFSAFA NATREDGVPD PLKTISRFDV IQMGSLLQLE VEGSGFLYRQ 240
  241 VRNMVALLIQ IGKEALDSDI VPMILETKDR RVLAKYTSLP ASPHGLCLVS VKYKEDHLKL 300
  301 PLDCPVTSSG RHHTITKCKL PFY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] PSI-BLAST 86.522879 No description for 2nqpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle