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View Structure Prediction Details

Protein: gi|30680075, gi|...
Organism: Arabidopsis thaliana
Length: 323 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30680075, gi|....

Description E-value Query
Range
Subject
Range
gi|110737769 - gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
370.0 [0..1] [323..1]

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Predicted Domain #1
Region A:
Residues: [1-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCVTPALPP SLFTNGYLSS PQNISMTNLN SSVKVSDSGA YKWRLVIAYD GTRFAGWQYQ  60
   61 ESPPTIQSML EKALIQITEL GRKELQLIGA GRTDAGVHAW GQVAHFVTPF NYTSLDSFHA 120
  121 ALNGLLPKDI RVRELSAAVP EFHARFSASS KVYRYQIYND TFMDPFQRHW AYHCAYKLNA 180
  181 SKMREAANLF VGKHDFSAFA NATREDGVPD PLKTISRFDV IQMGSLLQLE VEGSGFLYRQ 240
  241 VRNMVALLIQ IGKEALDSDI VPMILETKDR RVLAKYTSLP ASPHGLCLVS VKYKEDHLKL 300
  301 PLDCPVTSSG RHHTITKCKL PFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.522879
Match: 2nqpA
Description: No description for 2nqpA was found.

Predicted functions:

Term Confidence Notes
pseudouridine synthase activity 5.60483019625575 bayes_pls_golite062009
intramolecular transferase activity 4.62815459483632 bayes_pls_golite062009
isomerase activity 3.43067391737824 bayes_pls_golite062009
catalytic activity 2.39224964671205 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle