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Protein Overview: BPM6_ARATH

General Information:
Name(s) found: BPM6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30691638|ref|NP_189956.2| ATBPM6 (BTB-POZ and MATH domain 6); protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|119935881|gb|ABM06022.1| At3g43700 [Arabidopsis thaliana] [NCBI NR]
  • BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1 [Swiss-Prot]
  • speckle-type POZ protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Speckle-type POZ protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATBPM6 | ATBPM6 (BTB-POZ AND MATH DOMAIN 6); protein binding | chr3:15612931-15614486 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATBPM6; protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6 | chr3:15601944-15603499 FORWARD LENGTH=415 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 415 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    Biological Process: cellular response to salt stress [IEP]
    response to osmotic stress [IEP]
    Molecular Function: protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLMTRTSG SSSPNTIPDQ IESPTSSRSV TQTTNGSHQF VIQGYSLAKG IGVGKHIASD  60
   61 NFSVGGYQWT IFVYPDGKNP EDNSSYVSVF IVLASECTEV RALFELSLVD QSGKGKHKVH 120
  121 SHFNRSLDGG PYTLKYRGSM WGYKRFFRRS LLETSDYLKD DCLKINCTVG VVVSEMHCPR 180
  181 LLSIHVPDSE LGSHFGKLLD TLQGSDVTFD VAGEKFQAHK LVLAARSQFF RSMFYNTLAE 240
  241 NNSDVVISDL EPKVFKALLH FMYKDSLPGD VEPLTAHSFD LLRPSEIDDT LIVKLLAAAE 300
  301 MYNLSRLRLL CESHICKGIS ISSVSKILAL SDKYNASELK SVSLKFTAEN LAAVLQTKAY 360
  361 EDLKDDCPNL QSELLKAVAG YDDTSSSGGG KSQSVWAQLS NGGETSSRRV RQRTT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] PSI-BLAST 18.0 Solution structure of N-terminal domain of speckle-type POZ protein
    2 View Details [170..302] PSI-BLAST 10.0 No description for 2ppiA was found.
    3 View Details [303..415] PSI-BLAST 8.0 No description for 2eqxA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.27961770997634 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.31204855886285 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.07240204386411 bayes_pls_golite062009
  • protein binding
    		•  1.02403906930141 bayes_pls_golite062009
  • DNA binding
    		•  0.996677220619186 bayes_pls_golite062009
  • catalytic activity
    		•  0.00622013180681097 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle