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Protein Overview: gi|115646890, gi...

General Information:
Name(s) found: gi|42564975 [NCBI NR]
gi|115646890 [NCBI NR]
Description(s) found:
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  • gi|42564975|ref|NP_188410.2| DNAJ heat shock family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|115646890|gb|ABJ17154.1| At3g17830 [Arabidopsis thaliana] [NCBI NR]
  • DNAJ heat shock family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNAJ heat shock family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNAJ heat shock family protein | chr3:6101874-6104509 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g17830 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr3:6101868-6104503 FORWARD LENGTH=517 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g17830 OS=Arabidopsis thaliana GN=At3g17830 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 517 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: response to heat [IEA]
    protein folding [IEA][ISS]
    Molecular Function: ATP binding [IEA]
    heat shock protein binding [IEA]
    unfolded protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA  60
   61 GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA EDKFKQISAA YEVLSDEEKR 120
  121 SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS 180
  181 LDLDIRYDLR LSFEEAVFGV KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN 240
  241 SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI 300
  301 QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS 360
  361 MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI SIPKKLSERE RKLVEEFSSL 420
  421 RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM 480
  481 KVSETSIAFS VLALCVITSA VALVQKKGNR LKQKKET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..172] PSI-BLAST 20.30103 NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
    2 View Details [173..428] PSI-BLAST 46.0 The crystal structure of Hsp40 Ydj1
    3 View Details [429..517] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  3.04403163860617 bayes_pls_golite062009
  • protein binding
    		•  2.65982681685488 bayes_pls_golite062009
  • binding
    		•  2.63138872417193 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31739509739943 bayes_pls_golite062009
  • heat shock protein binding
    		•  2.17994194200939 bayes_pls_golite062009
  • DNA binding
    		•  1.88444505115207 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.73387701301727 bayes_pls_golite062009
  • chaperone binding
    		•  1.61155546076854 bayes_pls_golite062009
  • transporter activity
    		•  1.24234020477393 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.927337691912581 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.675735261884317 bayes_pls_golite062009
  • Hsp70 protein binding
    		•  0.541755903922701 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.511269247434737 bayes_pls_golite062009
  • transferase activity
    		•  0.240656521918556 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.130185025729857 bayes_pls_golite062009
  • catalytic activity
    		•  0.106988907594358 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0276971914937192 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.7298921704023 bayes_pls_golite062009
  • protein binding
    		•  2.6297172985864 bayes_pls_golite062009
  • protein disulfide isomerase activity
    		•  2.4409950647303 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing S-S bonds
    		•  2.4409950647303 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting keto- and enol-groups
    		•  2.23398279564144 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.04158808514315 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.594882036388263 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.301226589648736 bayes_pls_golite062009
  • catalytic activity
    		•  0.276917867171685 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle