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Protein Overview: gi|124301088, gi...

General Information:
Name(s) found: gi|42569997 [NCBI NR]
gi|124301088 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42569997|ref|NP_182225.3| peptide chain release factor, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    mitochondrion [IEA]
    Biological Process: translational termination [IEA][ISS]
    Molecular Function: translation release factor activity [IEA][ISS]
    translation release factor activity, codon specific [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLIRPNFL SNLIRYCSRG THSHDRSLRS VLSSNMIRLY TTGMEPQLSP DLIKIMDQRL  60
   61 SAIEHRNAVL QKLINQPEYS PEEFSRANKE LRKLRDSMLL INDLRAKQKE IDGLKSLVSE 120
  121 SSDDKDMLDL AVGELDEAVE EEKRLQTLLL KSLLPKDEAD ERDCILEVRA GTGGEEASLF 180
  181 AMDIFRMYER YSQKKGWKFD IVDITESDMK GYKEASAAIC GASVYGKLKF ESGIHRVQRI 240
  241 PITEKSGRIH TSAISVAILP QADEVDVQLR NEDLRIDTYR SGGSGGQHAN TTNSAVRIIH 300
  301 LPTGMMVSIQ DERSQHMNRA KALKVLCARL YEIERLRIQS SRSKLRSDQI GSGDRSGRIR 360
  361 TYNFPQGRVT DHRVGITHHA IEDMMQGENL DMFIDALLLR QEMDAIASFS STS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..66] PSI-BLAST 15.522879 Crystal Structure Analysis of ClpB
    2 View Details [67..413] PSI-BLAST 114.0 Molecular basis for bacterial class 1 release factor methylation by PrmC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • translation release factor activity
    		•  8.81340749100602 bayes_pls_golite062009
  • translation termination factor activity
    		•  8.79662142368955 bayes_pls_golite062009
  • translation regulator activity
    		•  4.37724037539958 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  4.37180094464794 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.32397225745616 bayes_pls_golite062009
  • binding
    		•  2.93072278766889 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle