YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|115311407, gi...

General Information:
Name(s) found: gi|61742685 [NCBI NR]
gi|42569904 [NCBI NR]
gi|115311407 [NCBI NR]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • gi|61742685|gb|AAX55163.1| hypothetical protein At2g43960 [Arabidopsis thaliana] [NCBI NR]
  • gi|42569904|ref|NP_181924.2| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|115311407|gb|ABI93884.1| At2g43960 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 442 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTKNKTPP PRPDDDELRS IMLERLSIAA ARGGLEMEEK LKSRFVGLDI PSCSFVFPKG  60
   61 RDHHIYKQKI AEYTKSPPLH SPPPLPPGLV DQCCLKYNPL EQVAIIDELS AFTVRVPEGG 120
  121 MTRKELGIIK FTAQFVLRYG QYFRLALRDR VSTDTEFKFL DKGDSRAHFF SLLFLGYSHL 180
  181 LRAWEYPLVG MDVLVDGFLS ALNSFKEKLE GDEELVDKIK TDRHDFVVCD EYFADLENKA 240
  241 LELKLKTMAR MHHPLNKHDS QGTLRVPPVL VLFRVGIPQG GMMRKELGLM KFTAMFVVRY 300
  301 GNDFWDALWD RVSSTETEFQ FLKRNPGNDR GMLLFSQLLL AFGNVVQPWG LCPRESNPPA 360
  361 RMEAVLEGFF TAFSAFKKKQ EDEEDEVVNK LVTDRRDFVV SETFQYFLDI EESTPLPERL 420
  421 PLRQTGSMFA RRHPMVQQPP LL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] PSI-BLAST 15.154902 No description for 2dt6A was found.
    2 View Details [105..200] PSI-BLAST 18.522879 No description for 2dt7B was found.
    3 View Details [201..267] deduced N/A No confident structure predictions are available.
    4 View Details [268..376] PSI-BLAST 17.30103 No description for 2e60A was found.
    5 View Details [377..442] MSA 2.015992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle