YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115311407, gi...
Organism:	Arabidopsis thaliana
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115311407, gi....

Description	E-value	Query Range	Subject Range
gi\|29725817 - gi\|29725817\|gb\|AAO89206.1\| hypothetical protein [Arabidopsis thaliana]	353.0	[0..1]	[442..1]
gi\|91076314 - gi\|91076314\|ref\|XP_969681.1\| PREDICTED: similar to spliceosome associated protein [Tribolium castane...	256.0	[0..6]	[292..18]
gi\|34878996, gi\|... - gi\|34878996\|ref\|XP_223566.2\| PREDICTED: similar to Splicing factor 3 subunit 1 (SF3a120) [Rattus nor...	249.0	[0..2]	[263..33]
HGNC:10765\|MIM:6... - factor 3a, subunit 1, 120kDa SF3A1 - splicing factor 3a, subunit 1, 120kDa gi\|123984535, gi... - gi\|208965566\|dbj\|BAG72797.1\| splicing factor 3a, subunit 1 [synthetic construct], gi\|123998511\|gb\|AB...	248.0	[0..2]	[263..33]
gi\|73995021 - gi\|73995021\|ref\|XP_865887.1\| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome associat...	248.0	[0..2]	[263..33]
gi\|114685836 - gi\|114685836\|ref\|XP_515067.2\| PREDICTED: splicing factor 3a, subunit 1, 120kDa isoform 3 [Pan troglo...	247.0	[0..2]	[263..33]
gi\|76639507 - gi\|76639507\|ref\|XP_883280.1\| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome associat...	247.0	[0..2]	[263..33]

Back

Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTKNKTPP PRPDDDELRS IMLERLSIAA ARGGLEMEEK LKSRFVGLDI PSCSFVFPKG  60
   61 RDHHIYKQKI AEYTKSPPLH SPPPLPPGLV DQCCLKYNPL EQVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2dt6A
Description:	No description for 2dt6A was found.

Predicted Domain #2

Region A:
Residues: [105-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIDELSAFTV RVPEGGMTRK ELGIIKFTAQ FVLRYGQYFR LALRDRVSTD TEFKFLDKGD  60
   61 SRAHFFSLLF LGYSHLLRAW EYPLVGMDVL VDGFLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	2dt7B
Description:	No description for 2dt7B was found.

Predicted Domain #3

Region A:
Residues: [201-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALNSFKEKLE GDEELVDKIK TDRHDFVVCD EYFADLENKA LELKLKTMAR MHHPLNKHDS  60
   61 QGTLRVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [268-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLVLFRVGI PQGGMMRKEL GLMKFTAMFV VRYGNDFWDA LWDRVSSTET EFQFLKRNPG  60
   61 NDRGMLLFSQ LLLAFGNVVQ PWGLCPRESN PPARMEAVLE GFFTAFSAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	2e60A
Description:	No description for 2e60A was found.

Predicted Domain #5

Region A:
Residues: [377-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKQEDEEDE VVNKLVTDRR DFVVSETFQY FLDIEESTPL PERLPLRQTG SMFARRHPMV  60
   61 QQPPLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits