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Protein Overview: gi|91806252, gi|...

General Information:
Name(s) found: gi|91806252 [NCBI NR]
gi|42569272 [NCBI NR]
Description(s) found:
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  • gi|91806252|gb|ABE65854.1| glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42569272|ref|NP_179968.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr2:10181636-10183569 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr2:10174556-10176489 FORWARD LENGTH=477 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycoside hydrolase family 28 protein/polygalacturonase family protein OS=Arabidopsis thaliana GN=At2g23900 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE  60
   61 FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW LTGSFNLTSH FTLFIQKGAT 120
  121 ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV 180
  181 KYRSGGFKGI TRPYTIEIIF SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS 240
  241 PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS 300
  301 AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW 360
  361 MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL DGFKNDPFTK ICMSNIKIDL 420
  421 AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..477] PSI-BLAST 50.045757 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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