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Protein Overview: PUB4_ARATH

General Information:
Name(s) found: PUB4_ARATH [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 811 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA  60
   61 FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD TIVDTFQFLM SSKNHLPDEL 120
  121 SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE 180
  181 AVALERQKEM AEQSENNAEV EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL 240
  241 EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN 300
  301 DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR 360
  361 ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF EDRSNDSREL RTDAPGRSSV 420
  421 SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR 480
  481 SGPLAATTSA ATRRDLSDFS PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE 540
  541 TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ 600
  601 ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK 660
  661 IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA MIVQSGAVRY LIDLMDPAAG 720
  721 MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF 780
  781 CNMVLQEGAV PPLVALSQSG TPRAREKVQT L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] MSA 2.260976 View MSA. No confident structure predictions are available.
    2 View Details [227..318] PSI-BLAST 12.522879 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    3 View Details [319..408] deduced N/A No confident structure predictions are available.
    4 View Details [409..811] PSI-BLAST 47.69897 beta-Catenin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle