| Protein: | PUB4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 811 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
451.0 | [0..1] | [807..80] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA 60
61 FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD TIVDTFQFLM SSKNHLPDEL 120
121 SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE 180
181 AVALERQKEM AEQSENNAEV EFLDQLIVIV NRMHERLLLI KQTQTS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [227-318] |
1 11 21 31 41 51
| | | | | |
1 SVAILADFFC PLSLEVMTDP VIVSSGQTYE KAFIKRWIDL GLKVCPKTRQ TLTHTTLIPN 60
61 YTVKALIANW CETNDVKLPD PNKSTSLNEL SP
|
| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [319-408] |
1 11 21 31 41 51
| | | | | |
1 LLSCTDSIPS TGADVSARKV SNKSHDWDAS SSETGKPSFS SRATEREGAS PSRPASALGA 60
61 SSPGISGNGY GLDARRGSLN DFEDRSNDSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [409-811] |
1 11 21 31 41 51
| | | | | |
1 ELRTDAPGRS SVSSTTRGSV ENGQTSENHH HRSPSATSTV SNEEFPRADA NENSEESAHA 60
61 TPYSSDASGE IRSGPLAATT SAATRRDLSD FSPKFMDRRT RGQFWRRPSE RLGSRIVSAP 120
121 SNETRRDLSE VETQVKKLVE ELKSSSLDTQ RQATAELRLL AKHNMDNRIV IGNSGAIVLL 180
181 VELLYSTDSA TQENAVTALL NLSINDNNKK AIADAGAIEP LIHVLENGSS EAKENSAATL 240
241 FSLSVIEENK IKIGQSGAIG PLVDLLGNGT PRGKKDAATA LFNLSIHQEN KAMIVQSGAV 300
301 RYLIDLMDPA AGMVDKAVAV LANLATIPEG RNAIGQEGGI PLLVEVVELG SARGKENAAA 360
361 ALLQLSTNSG RFCNMVLQEG AVPPLVALSQ SGTPRAREKV QTL
|
| Detection Method: | |
| Confidence: | 47.69897 |
| Match: | 1jdhA |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
