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Protein Overview: gi|10120636, gi|...

General Information:
Name(s) found: gi|10120639 [NCBI NR]
gi|10120638 [NCBI NR]
gi|10120637 [NCBI NR]
gi|10120636 [NCBI NR]
Description(s) found:
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  • gi|10120639|pdb|1EGI|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI NR]
  • gi|10120638|pdb|1EGI|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI NR]
  • gi|10120637|pdb|1EGG|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI NR]
  • gi|10120636|pdb|1EGG|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI NR]
  • Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptorgi|10120638|pdb|1EGI|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptorgi|10120637|pd [nrdb_11152004_Chlamydomonas]
  • Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
    • Organism: Homo sapiens
    Length: 147 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIPKCPEDWG ASSRTSLCFK LYAKGKHEKK TWFESRDFCR ALGGDLASIN NKEEQQTIWR  60
   61 LITASGSYHK LFWLGLTYGS PSEGFTWSDG SPVSYENWAY GEPNNYQNVE YCGELKGDPT 120
  121 MSWNDINCEH LNNWICQIQK GQTPKPD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|10120636, gi|... gi|112491310

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 32.154902 Macrophage mannose receptor, CRD4

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • sugar binding
    		•  4.25427593970895 bayes_pls_golite062009
  • carbohydrate binding
    		•  3.65149893663837 bayes_pls_golite062009
  • monosaccharide binding
    		•  3.38024801519156 bayes_pls_golite062009
  • polysaccharide binding
    		•  2.78053603738148 bayes_pls_golite062009
  • sialic acid binding
    		•  2.70278030510986 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  2.5972853963145 bayes_pls_golite062009
  • pattern binding
    		•  2.50071583096866 bayes_pls_golite062009
  • binding
    		•  1.77303592925534 bayes_pls_golite062009
  • extracellular matrix structural constituent
    		•  1.50055350076635 bayes_pls_golite062009
  • hyaluronic acid binding
    		•  1.45854626657646 bayes_pls_golite062009
  • receptor binding
    		•  1.13770696717742 bayes_pls_golite062009
  • oligosaccharide binding
    		•  0.718827015320259 bayes_pls_golite062009
  • protein binding
    		•  0.622587530215903 bayes_pls_golite062009
  • mannose binding
    		•  0.522340540326499 bayes_pls_golite062009
  • integrin binding
    		•  0.198144305823921 bayes_pls_golite062009
  • receptor activity
    		•  0.180262004156979 bayes_pls_golite062009
  • galactose binding
    		•  0.17307731396675 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.147767214030612 bayes_pls_golite062009
  • signal transducer activity
    		•  0.147767214030612 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle