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View Structure Prediction Details

Protein: MLP3A_RAT
Organism: Rattus norvegicus
Length: 121 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MLP3A_RAT.

Description E-value Query
Range		 Subject
Range
gi|25989541 - gi|25989541|gb|AAM77034.1| polyprotein [Bovine viral diarrhea virus-1]
 8.0E-58 [3..120] [185..300]
gi|114663750 - gi|114663750|ref|XP_511114.2| PREDICTED: similar to GABARAPL2 protein [Pan troglodytes]
 3.0E-57 [3..121] [108..224]
gi|109129278 - gi|109129278|ref|XP_001104154.1| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [M...
 6.0E-57 [3..121] [151..267]
gi|73587001 - gi|73587001|gb|AAI02903.1| GABARAPL2 protein [Bos taurus]
 1.0E-55 [3..121] [34..150]
gi|50758585 - gi|50758585|ref|XP_417327.1| PREDICTED: similar to Zgc:77094 [Gallus gallus]
 8.0E-55 [1..121] [71..191]
GABARAPL2 - GABA(A) receptor-associated protein-like 2
GBRL2_BOVIN - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1
ENSCJAT00000027704 - null
gi|149699371 - gi|149699371|ref|XP_001501591.1| PREDICTED: similar to Gamma-aminobutyric acid receptor-associated p...
GBRL2_MOUSE - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=1 SV=1
ENSPTRT00000015417 - null
tr|M3W9J5|M3W9J5... - GABA type A receptor associated protein like 2 OS=Felis catus GN=GABARAPL2 PE=3 SV=1
gi|73957378 - gi|73957378|ref|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [Canis...
gi|90085046 - gi|90085046|dbj|BAE91264.1| unnamed protein product [Macaca fascicularis]
GBRL2_RAT - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=3 SV...
ENSOCUP000000142... - pep:novel chromosome:oryCun2:5:30199237:30210711:1 gene:ENSOCUG00000016600 transcript:ENSOCUT0000001...
CCDS10921.1_1 - null
gi|123992850, gi... - gi|60822710|gb|AAX36618.1| GABA(A) receptor-associated protein-like 2 [synthetic construct], gi|2089...
tr|G3I4N5|G3I4N5... - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Cricetulus griseus GN=I79_018418 PE=3 ...
ENSMMUT000000080... - null, null
 6.0E-54 [3..121] [1..117]
gi|60821791 - gi|60821791|gb|AAX36587.1| GABA(A) receptor-associated protein-like 2 [synthetic construct]
 9.0E-54 [3..121] [1..117]
MLP3B_RAT - Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3
 1.0E-53 [1..120] [1..120]
gi|12832696 - gi|12832696|dbj|BAB22217.1| unnamed protein product [Mus musculus]
 1.0E-53 [3..121] [1..117]

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Predicted Domain #1
Region A:
Residues: [1-121] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSDRPFKQR RSFADRCKEV QQIRDQHPSK IPVIIERYKG EKQLPVLDKT KFLVPDHVNM  60
   61 SELVKIIRRR LQLNPTQAFF LLVNQHSMVS VSTPIADIYE QEKDEDGFLY MVYASQETFG 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 2z0eB
Description: No description for 2z0eB was found.

Predicted functions:

Term Confidence Notes
tubulin binding 3.8719684227967 bayes_pls_golite062009
small conjugating protein ligase activity 3.71144418714309 bayes_pls_golite062009
microtubule binding 3.61517229466799 bayes_pls_golite062009
ubiquitin-protein ligase activity 3.30801071565148 bayes_pls_golite062009
cytoskeletal protein binding 3.11253399564789 bayes_pls_golite062009
beta-tubulin binding 2.878827078106 bayes_pls_golite062009
binding 2.786655943372 bayes_pls_golite062009
acid-amino acid ligase activity 2.72499875710239 bayes_pls_golite062009
GABA receptor binding 2.41579236188889 bayes_pls_golite062009
protein tag 2.15059229834935 bayes_pls_golite062009
protein binding 1.86841453215444 bayes_pls_golite062009
transcription regulator activity 1.42747465816672 bayes_pls_golite062009
nucleic acid binding 1.32707653701567 bayes_pls_golite062009
DNA binding 1.22622447288034 bayes_pls_golite062009
molecular transducer activity 0.87452559909702 bayes_pls_golite062009
signal transducer activity 0.87452559909702 bayes_pls_golite062009
SUMO ligase activity 0.80391127659342 bayes_pls_golite062009
hydrolase activity 0.79940718386175 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.753885975469065 bayes_pls_golite062009
structural constituent of ribosome 0.599634454232833 bayes_pls_golite062009
structural molecule activity 0.576819726104993 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.536856055841234 bayes_pls_golite062009
kinase activity 0.506057697290914 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.410719674374641 bayes_pls_golite062009
protein kinase activity 0.325253662829604 bayes_pls_golite062009
enzyme binding 0.240262781026149 bayes_pls_golite062009
transferase activity 0.236208643697075 bayes_pls_golite062009
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