| Protein: | Psi-PA |
| Organism: | Drosophila melanogaster |
| Length: | 716 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Psi-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
290.0 | [0..9] | [432..161] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MSSGSGGGGG GGGGPGGASI TQAIAQAAAV AARLAASAGT SCEEQIRLPE SVAGAFMGRS 60
61 SNDTITHIQA ESGVKVQVMQ DQDRVIMLRG QRDTVTKGRE MIQNMANRAG GGQVEVLLTI 120
121
|
| Detection Method: |  |
| Confidence: | 13.30103 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-321] |
1 11 21 31 41 51
| | | | | |
1 NMPPPGPSGY PPYQEIMIPG AKVGLVIGKG GDTIKQLQEK TGAKMIIIQD GPNQELIKPL 60
61 RISGEAQKIE HAKQMVLDLI AQKDAQGQQQ GGRGGGGGGG GPGMGFNNFN NGNGGESTEV 120
121 FVPKIAVGVV IGKGGDMIRK IQTECGCKLQ FIQGKNDEMG DRRCVIQGTR QQVDDAKRTI 180
181 DGLIENVMQR NGMNRNGNGG G
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [322-424] |
1 11 21 31 41 51
| | | | | |
1 GGPGGDSGNS NYGYGYGVNH AQGGREEITF LVPASKCGIV IGRGGETIKL INQQSGAHTE 60
61 MDRNASNPPN EKLFKSKGTT DQVEAARQMI SEKINMELNV ISR
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.766407798661875 | bayes_pls_golite062009 |
| nucleic acid binding | 0.1608635436815 | bayes_pls_golite062009 |
| RNA binding | 0.0205643208063799 | bayes_pls_golite062009 |
|
Region A: Residues: [425-607] |
1 11 21 31 41 51
| | | | | |
1 KPIGGGPGGG GGNSGGGQNN SHHNQQQGGY GGQNQMQGGD PNSGAGYQQQ PWGGPYGQQG 60
61 WDPSGQQQQM AMANQGGSAA GGASGGQDYS AQWIEYYKQM GCHREAEMIE QQMKAKQAGG 120
121 SSGPVQQQQP QQQQQSQQQT GGAGAGGADY SAQWAEYYRS VGKIEEAEAI EKTLKNKQNG 180
181 SGG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [608-716] |
1 11 21 31 41 51
| | | | | |
1 QSSTPNPSQG GSGQQQPNPA AAAAAAAAAA AAAGGYGQSM TPTQYAQYSQ YYAAAAAAGG 60
61 QPQGAPQPGG GQSGGPPGNY PGNYPGAGYG GYPGAPGQQQ QKSHKNDNH
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
