| Protein: | ssp4-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1540 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssp4-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
828.0 | [0..1] | [1540..1] |
|
Region A: Residues: [1-301] |
1 11 21 31 41 51
| | | | | |
1 MDVETQEIRQ ARQRASVKWL LSKAFNNRVP DNLKEPFYRD HENQERLKPQ IIVELGNATL 60
61 YCQTLANLYS DPNYQSMNHW SIIQTLARKG VPVAESADMP ITETVLIQTN PLRINAHMSV 120
121 IESLMVLYAK EISSGDRVMA AIRRISGNNY QAPTGQSYEQ ALLGWISHAC AALKKRIIKE 180
181 VDAGLPDDNG SRLQTPDIPP VRDFQDLCDG ICLALLISYY CPKVVPWTSV RINYLPAVED 240
241 SIHNILLVCN FSQKHLPYTV MHMTPEDVTY MRGSMKLNLV VLLTDLFNLF EIHPAKCVCY 300
301 P
|
| Detection Method: |  |
| Confidence: | 2.11 |
| Match: | 1sh5A |
| Description: | Crystal structure of actin-binding domain of mouse plectin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 6.0562477479739 | bayes_pls_golite062009 |
| microtubule binding | 5.63808442303747 | bayes_pls_golite062009 |
| tubulin binding | 5.63161872515663 | bayes_pls_golite062009 |
| actin binding | 5.4843525466095 | bayes_pls_golite062009 |
| actin filament binding | 3.58546515893973 | bayes_pls_golite062009 |
| binding | 2.58893177478913 | bayes_pls_golite062009 |
| protein binding | 2.38389820189848 | bayes_pls_golite062009 |
| microtubule plus-end binding | 2.34204492212228 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 2.33067686982903 | bayes_pls_golite062009 |
| dynein binding | 0.282231591450947 | bayes_pls_golite062009 |
|
Region A: Residues: [302-1054] |
1 11 21 31 41 51
| | | | | |
1 GMDGQVPHSN SFGGGLNRRS TPPNEYQTVQ SNNFDGNHAE AFVVHKSRGI TTLASMHSQQ 60
61 QQQLHQQQQH QQQYHQQPLQ QHPSQSQLQI QQQEPLVPAR LRQAKEKTNV ESKADERGDF 120
121 VAAGRPSNWE QSRRPSFAGR RSRRNSSSED SQLTIENFGG SQDQLNTLGR YERDRERKLS 180
181 NTSVGSYPVE PAVAVRSSIA DARGTLQLGY DTDSGSEKQD RETEKYSMRR QVSVDNVPTV 240
241 SSHNLSNAGS PLPVARHKQH SSDKDYSSNS GMTPDAYNDS RSTSGYDPES TPVRKSSTSS 300
301 MPASPAAWQL DVGDDDMRSL ENASKLSTIR MKLEEKRRRI EQDKRKIEMA LLRHQEKEDL 360
361 ESCPDVMKWE TMSNESKRTP DMDPVDLDKY QAYNAPVSAY SSRPPSRDPY QQQLHHQQQQ 420
421 PMPMPQPMQY VNEHGQYMSP PQPAHYMPQQ AQQPQSIYSD NGAAYNHSNH SPYGGTPQYR 480
481 SSVVYDDYGQ PTNHFYLHES SPQPQAHQHP QRRTWAHSAA AAAYEQQQQI QPSLVDVNAW 540
541 QTQQHQKQKQ TWMNRPPSSA GAPSPGSFML HQNGGGGGGG GGGGELQHLF QVQASPQHGQ 600
601 RQVSGSNGVQ RQQSLTNLRD NRSPKAPQNM GMPMGMPMQQ EDMMAPQSIC FIGDEEDVDE 660
661 LERNIIESMQ STHISDFVHQ QQQQHQHQQQ LQQQQRLQGH SGRGSSSEDY DSGEMISNKL 720
721 NITSGNLTYR IPSPSRPSIQ ANSFQDPRAM AAA
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [1055-1127] |
1 11 21 31 41 51
| | | | | |
1 SGGEDQPPEK GFYISFDDEQ PKRPKPPLRA KRSPKKESPP GSRDSVDNQA TLKRESLSHL 60
61 HNNNNIGFGN DDV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1128-1457] |
1 11 21 31 41 51
| | | | | |
1 NSKPVTRHSI HGLNNSNSVK SPGNATYNKY TDEPPIQLRQ LAVSGAMSPT SNERHHLDDV 60
61 SNQSPQQTQQ PMSPTRLQQS SNNAEAAKNK ALVIGADSTN LDPESVDEME RRKEKIMLLS 120
121 LQRRQQQEEA KARKEIEASQ KREKEREKEE ERARKKEEQM ARRAAILEQH RLKKAIEEAE 180
181 REGKTLDRPD LHVKLQSHSS TSTTPRLRQQ RTTRPRPKTI HVDDASVDIS EASSISSRGK 240
241 KGSSSNLTDS GLGRATPPRR APSPGMGMGA SGPKLYKQPA AKSNRGIILN AVEYCVFPGV 300
301 VNREAKQKVL EKIARSEAKH FLVLFRDAGC
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1458-1540] |
1 11 21 31 41 51
| | | | | |
1 QFRALYSYQP ETDQVTKLYG TGPSQVEEVM FDKFFKYNSG GKCFSQVHTK HLTVTIDAFT 60
61 IHNSLWQGKR VQLPSKKDMA LVI
|
| Detection Method: | |
| Confidence: | 4.54 |
| Match: | 1ugjA |
| Description: | Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 |
Matching Structure (courtesy of the PDB): |
|
