| Protein: | ssp4-PC |
| Organism: | Drosophila melanogaster |
| Length: | 1630 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssp4-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
784.0 | [0..1] | [1630..1] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MDVETQEIRQ ARQRASVKWL LSKAFNNRVP DNLKEPFYRD HENQERLKPQ IIVELGNATL 60
61 YCQTLANLYS DPNYQSMNHW SIIQTLARKG VPVAESADMP ITETVLIQTN PLRINAHMSV 120
121 IESLMVLYAK EISSGDRVMA AIRRISGNNY QAPTGQSYEQ ALLGWISHAC AALKKRIIKE 180
181 VDAGLPDDNG SRLQTPDIPP VRDFQDLCDG ICLALLISYY CPKVVPWTSV RINYLPAVED 240
241 SIHNILLVCN FSQKHLPYTV MHMTPEDVTY MRGSMKLNLV VLLTDLFNLF EIHPAKC
|
| Detection Method: |  |
| Confidence: | 2.2 |
| Match: | 1sh5A |
| Description: | Crystal structure of actin-binding domain of mouse plectin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 6.0562477479739 | bayes_pls_golite062009 |
| microtubule binding | 5.63808442303747 | bayes_pls_golite062009 |
| tubulin binding | 5.63161872515663 | bayes_pls_golite062009 |
| actin binding | 5.4843525466095 | bayes_pls_golite062009 |
| actin filament binding | 3.58546515893973 | bayes_pls_golite062009 |
| binding | 2.58893177478913 | bayes_pls_golite062009 |
| protein binding | 2.38389820189848 | bayes_pls_golite062009 |
| microtubule plus-end binding | 2.34204492212228 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 2.33067686982903 | bayes_pls_golite062009 |
| dynein binding | 0.282231591450947 | bayes_pls_golite062009 |
|
Region A: Residues: [298-392] |
1 11 21 31 41 51
| | | | | |
1 VCYPGMDGQV PHSNSFGGGL NRRSTPPNEY QTVQSNNFDG NHAEAFVVHK SRGITTLASM 60
61 HSQQQQQLHQ QQQHQQQYHQ QPLQQHPSQS QLQIQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [393-977] |
1 11 21 31 41 51
| | | | | |
1 QQEPLVPARL RQAKEKTNVE SKADERGRRS RRNSSSEDSQ LTIENFGGSQ DQLNTLGRYE 60
61 RDRERKLSNT SVGSYPVEPA VAVRSSIADA RGTLQLGYDT DSGSEKQDRE TEKYSMRRQV 120
121 SVDNVPTVSS HNLSNAGSPL PVARHKQHSS DKDYSSNSGM TPDAYNDSRS TSGYDPESTP 180
181 VRKSSTSSMP ASPAAWQLDV GDDDMRSLEN ASKLSTIRMK LEEKRRRIEQ DKRKIEMALL 240
241 RHQEKEDLES CPDVMKWETM SNESKRTPDM DPVDLDKYQQ SIAIMNMNLQ DIQQDIHRLA 300
301 TQQSQMQAQH LQAQQLMQAQ QIANMLNQAY NAPVSAYSSR PPSRDPYQQQ LHHQQQQPMP 360
361 MPQPMQYVNE HGQYMSPPQP AHYMPQQAQQ PQSIYSDNGA AYNHSNHSPY GGTPQYRSSV 420
421 VYDDYGQPTN HFYLHESSPQ PQAHQHPQRR TWAHSAAAAA YEQQQQIQPS LVDVNAWQTQ 480
481 QHQKQKQTWM NRPPSSAGAP SPGSFMLHQN GGGGGGGGGG GELQHLFQVQ ASPQHGQRQV 540
541 SGSNGVQRQQ SLTNLRDNRS PKAPQNMGMP MGMPMQQEDM MAPQS
|
| Detection Method: | |
| Confidence: | 3.221849 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [978-1111] |
1 11 21 31 41 51
| | | | | |
1 ICFIGDEEDV DELERNIIES MQSTHISDFV HQQQQQHQHQ QQLQQQQRLQ GHSGRGSSSE 60
61 DYDSGEMISN KLNITSGNLT YRIPSPSRPS IQANSFQDPR AMAAASGGED QPPEKGFYIS 120
121 FDDEQPKRPK PPLR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1112-1236] |
1 11 21 31 41 51
| | | | | |
1 AKRSPKKESP PGSRDSVDNQ ATLKRESLSH LHNNNNIGFG NDDVNSKPVT RHSIHGLNNS 60
61 NSVKSPGNAT YNKYTDEPPI QLRQLAVSGA MSPTSNERHH LDDVSNQSPQ QTQQPMSPTR 120
121 LQQSS
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1237-1554] |
1 11 21 31 41 51
| | | | | |
1 NNAEAAKNKA LVIGADSTNL DPESVDEMER RKEKIMLLSL QRRQQQEEAK ARKEIEASQK 60
61 REKEREKEEE RARKKEEQMA RRAAILEQHR LKKAIEEAER EGKTLDRPDL HVKLQSHSST 120
121 STTPRLRQQR TTRPRPKTIH VDDASVDISE ASSISSRGKK GSSSNLTGYG QLSSNSMKRD 180
181 YYRGSQDSLT VKESPDDYPS TSSTPIGRRG SYKTSREPAG VERGRTLSRI SVAKGSTLNF 240
241 RGRKSNSLMN LCGPKLYKQP AAKSNRGIIL NAVEYCVFPG VVNREAKQKV LEKIARSEAK 300
301 HFLVLFRDAG CQFRALYS
|
| Detection Method: | |
| Confidence: | 22.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1555-1630] |
1 11 21 31 41 51
| | | | | |
1 YQPETDQVTK LYGTGPSQVE EVMFDKFFKY NSGGKCFSQV HTKHLTVTID AFTIHNSLWQ 60
61 GKRVQLPSKK DMALVI
|
| Detection Method: | |
| Confidence: | 56.69897 |
| Match: | 1ugjA |
| Description: | Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 |
Matching Structure (courtesy of the PDB): |
|
