YRC Public Data Repository - Protein Structure Prediction

Protein:	SC35-PA
Organism:	Drosophila melanogaster
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC35-PA.

Description	E-value	Query Range	Subject Range
gi\|89024885, gi\|... - gi\|89025936\|ref\|XP_942021.1\| PREDICTED: similar to Splicing factor, arginine/serine-rich, 46kD [Homo...	102.0	[0..1]	[106..331]
gi\|114613263 - gi\|114613263\|ref\|XP_519086.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	94.0	[0..1]	[106..75]
gi\|68370412 - gi\|68370412\|ref\|XP_683006.1\| PREDICTED: similar to ring finger protein 157 [Danio rerio]	67.0	[0..1]	[71..75]
gi\|220944588, gi... - gi\|220954528\|gb\|ACL89807.1\| SC35-PA [synthetic construct], gi\|220944588\|gb\|ACL84837.1\| SC35-PA [synt... FBpp0292041, FBp... - The gene SC35 is referred to in FlyBase by the symbol Dmel\SC35 (CG5442, FBgn0040286). It is a prote...	63.0	[0..1]	[112..84]
gi\|54644879, gi\|... - gi\|54644879\|gb\|EAL33619.1\| GA18884-PA [Drosophila pseudoobscura], gi\|125985583\|ref\|XP_001356555.1\| G...	53.0	[0..1]	[112..85]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRMLDGRE LRVQMARYGR PSSPTRSSSG RRGGGGGGGS GGRRRSRSRS PMRRRSRSPR  60
   61 RRSYSRSRSP GSHSPERRSK FSRSPVRGDS RNGIGSGSGG LAPAASRSRS RS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits