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View Structure Prediction Details

Protein: SC35-PA
Organism: Drosophila melanogaster
Length: 112 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC35-PA.

Description E-value Query
Range
Subject
Range
gi|89024885, gi|... - gi|89025936|ref|XP_942021.1| PREDICTED: similar to Splicing factor, arginine/serine-rich, 46kD [Homo...
102.0 [0..1] [106..331]
gi|114613263 - gi|114613263|ref|XP_519086.2| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
94.0 [0..1] [106..75]
gi|68370412 - gi|68370412|ref|XP_683006.1| PREDICTED: similar to ring finger protein 157 [Danio rerio]
67.0 [0..1] [71..75]
gi|220944588, gi... - gi|220954528|gb|ACL89807.1| SC35-PA [synthetic construct], gi|220944588|gb|ACL84837.1| SC35-PA [synt...
FBpp0292041, FBp... - The gene SC35 is referred to in FlyBase by the symbol Dmel\SC35 (CG5442, FBgn0040286). It is a prote...
63.0 [0..1] [112..84]
gi|54644879, gi|... - gi|54644879|gb|EAL33619.1| GA18884-PA [Drosophila pseudoobscura], gi|125985583|ref|XP_001356555.1| G...
53.0 [0..1] [112..85]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRMLDGRE LRVQMARYGR PSSPTRSSSG RRGGGGGGGS GGRRRSRSRS PMRRRSRSPR  60
   61 RRSYSRSRSP GSHSPERRSK FSRSPVRGDS RNGIGSGSGG LAPAASRSRS RS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.476 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.476 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.340 a.74.1 Cyclin-like
View Download 0.340 a.74.1 Cyclin-like
View Download 0.262 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.243 a.74.1 Cyclin-like
View Download 0.231 d.272.1 Description not found.


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