| Protein: | gi|45446996, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 572 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45446996, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
400.0 | [0..1] | [572..15] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MAHFCACEDV TSSDLLYIKT MGPSAILTKM PNITNEFSSR IFSSFRILPS SKPKTNGSLK 60
61 RSQNATNLSY SSSEISNQRR VRRKAAA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [88-261] |
1 11 21 31 41 51
| | | | | |
1 DMLSRNISMI LENLLKRYEQ SQLPTHGQGV PTVVQTNILI RSMGPVSELD MDYSMDCYFR 60
61 QYWRDKRLSF KGPIKSLSLS IKMLDKIWRP DTYFYNGKHS QIHMITVPNK LLRLDQNGGI 120
121 LYSMRLTIKA TCPMELQNFP MDRQSCPLVI GSYGYINQQL IYEWKNQDDA VSFV
|
| Detection Method: | |
| Confidence: | 60.0 |
| Match: | 2bg9E |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [262-572] |
1 11 21 31 41 51
| | | | | |
1 PGMTLNQFDL ISMMHRNFTT VYVPCILIVV LSWVSFWIHR EATSDRVSLC VTSVLTLSTI 60
61 SLDSRTDLPK VKYATALDWF LLMSFLYCIA TLLEFAGVHY FTKLGSGESP QLEDQWEDIC 120
121 IANSLSDHAG EVDGDGEADA DPFADEDSSN GSENDDNEAG ASESVESKSG VCVCNKNDAL 180
181 GLEYEVSLQN SLAGAGFLKR NAIFCPTYND PSYILPNTME RTTQTEPPAV SRLHQMWMCL 240
241 KSDNSFRKQR ERNAAAQKSE QGGANCYVNS VSLIDRVARI AFPMSFAFLN LLYWWAYGMY 300
301 KKEFSWSNMK S
|
| Detection Method: | |
| Confidence: | 34.30103 |
| Match: | 1oedE |
| Description: | Acetylcholine receptor protein, gamma chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 0.8634160537398 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.85769987951557 | bayes_pls_golite062009 |
| channel activity | 0.82494017759356 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.82494017759356 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.699135829541381 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.69403270260693 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.68865958955334 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.67623695447613 | bayes_pls_golite062009 |
| ion channel activity | 0.675765443996379 | bayes_pls_golite062009 |
| gated channel activity | 0.60374435462213 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.60262355448371 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.60262355448371 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.544647628998121 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.537135922480839 | bayes_pls_golite062009 |
| cation channel activity | 0.53391585932077 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.463355765957441 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.463355765957441 | bayes_pls_golite062009 |
| nicotinic acetylcholine-activated cation-selective channel activity | 0.26375810963714 | bayes_pls_golite062009 |
| binding | 0.227765742225932 | bayes_pls_golite062009 |
