| Protein: | gi|193787288, gi... |
| Organism: | Homo sapiens |
| Length: | 252 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|193787288, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..252] | [1..249] |
|
|
0.0 | [1..252] | [1..252] |
|
|
0.0 | [1..252] | [1..251] |
|
|
0.0 | [1..252] | [1..249] |
|
|
1.0E-88 | [35..252] | [16..235] |
|
|
2.0E-87 | [36..252] | [24..237] |
|
|
3.0E-87 | [56..252] | [1..197] |
|
|
1.0E-86 | [41..252] | [18..231] |
|
Region A: Residues: [1-171] |
1 11 21 31 41 51
| | | | | |
1 MEDGVAGPQL GAAAEAAEAA EARARPGVTL RPFAPLSGAA EADEGGGDWS FIDCEMEEVD 60
61 LQDLPSATIA CHLDPRVFVD GLCRAKFESL FRTYDKDITF QYFKSFKRVR INFSNPFSAA 120
121 DARLQLHKTE FLGKEMKLYF AQTLHIGSSH LAPPNPDKQF LISPPASPPV G
|
| Detection Method: |  |
| Confidence: | 38.69897 |
| Match: | 1weyA |
| Description: | Solution structure of RRM domain in calcipressin 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.11118333721636 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| RNA binding | 2.45916448091535 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.9432590957792 | bayes_pls_golite062009 |
| hydrolase activity | 1.69824301409862 | bayes_pls_golite062009 |
| mRNA binding | 1.62410365165765 | bayes_pls_golite062009 |
| transcription regulator activity | 1.24650529385826 | bayes_pls_golite062009 |
| DNA binding | 1.23082363146877 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 0.426324573266235 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0605038543305221 | bayes_pls_golite062009 |
|
Region A: Residues: [172-252] |
1 11 21 31 41 51
| | | | | |
1 WKQVEDATPV INYDLLYAIS KLGPGEKYEL HAATDTTPSV VVHVCESDQE KEEEEEMERM 60
61 RRPKPKIIQT RRPEYTPIHL S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
