| Protein: | gi|119608164, gi... |
| Organism: | Homo sapiens |
| Length: | 898 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119608164, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..898] | [1..898] |
|
|
0.0 | [1..898] | [1..903] |
|
|
0.0 | [45..898] | [38..891] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MFSQQQQQQL QQQQQQLQQL QQQQLQQQQL QQQQLLQLQQ LLQQSPPQAP LPMAVSRGLP 60
61 PQQPQQPLLN LQGTNSASLL NGSMLQRALL LQQLQGLDQF AMPPATYDTA GLTMPTATLG 120
121 NLRGYGMASP GLAAPSLTPP QLATPNLQQF FPQATRQSLL GPPPVGVPMN PSQFNLSGRN 180
181 PQKQARTSSS TTPNRKDSSS QTMPVEDKSD PPEGS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [216-477] |
1 11 21 31 41 51
| | | | | |
1 EEAAEPRMDT PEDQDLPPCP EDIAKEKRTP APEPEPCEAS ELPAKRLRSS EEPTEKEPPG 60
61 QLQVKAQPQA RMTVPKQTQT PDLLPEALEA QVLPRFQPRV LQVQAQVQSQ TQPRIPSTDT 120
121 QVQPKLQKQA QTQTSPEHLV LQQKQVQPQL QQEAEPQKQV QPQVQPQAHS QGPRQVQLQQ 180
181 EAEPLKQVQP QVQPQAHSQP PRQVQLQLQK QVQTQTYPQV HTQAQPSVQP QEHPPAQVSV 240
241 QPPEQTHEQP HTQPQVSLLA PE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [478-586] |
1 11 21 31 41 51
| | | | | |
1 QTPVVVHVCG LEMPPDAVEA GGGMEKTLPE PVGTQVSMEE IQNESACGLD VGECENRARE 60
61 MPGVWGAGGS LKVTILQSSD SRAFSTVPLT PVPRPSDSVS STPAATSTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [587-685] |
1 11 21 31 41 51
| | | | | |
1 SKQALQFFCY ICKASCSSQQ EFQDHMSEPQ HQQRLGEIQH MSQACLLSLL PVPRDVLETE 60
61 DEEPPPRRWC NTCQLYYMGD LIQHRRTQDH KIAKQSLRP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [686-898] |
1 11 21 31 41 51
| | | | | |
1 FCTVCNRYFK TPRKFVEHVK SQGHKDKAKE LKSLEKEIAG QDEDHFITVD AVGCFEGDEE 60
61 EEEDDEDEEE IEVEEELCKQ VRSRDISREE WKGSETYSPN TAYGVDFLVP VMGYICRICH 120
121 KFYHSNSGAQ LSHCKSLGHF ENLQKYKAAK NPSPTTRPVS RRCAINARNA LTALFTSSGR 180
181 PPSQPNTQDK TPSKVTARPS QPPLPRRSTR LKT
|
| Detection Method: | |
| Confidence: | 2.07 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.64382899824662 | bayes_pls_golite062009 |
| nucleic acid binding | 1.34250831649865 | bayes_pls_golite062009 |
| DNA binding | 1.19507161856307 | bayes_pls_golite062009 |
| transcription regulator activity | 0.973915756412119 | bayes_pls_golite062009 |
| transcription factor activity | 0.134824658171215 | bayes_pls_golite062009 |
