YRC Public Data Repository - Protein Structure Prediction

Protein:	YJJU_ECOLI
Organism:	Escherichia coli
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJJU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157163825, gi... - gi\|157163825\|ref\|YP_001461143.1\| patatin family phospholipase [Escherichia coli HS], gi\|157069505\|gb... gi\|157156545, gi... - gi\|157156545\|ref\|YP_001465898.1\| patatin family phospholipase [Escherichia coli E24377A], gi\|1570785... gi\|195937649 - gi\|195937649\|ref\|ZP_03083031.1\| hypothetical protein EscherichcoliO157_14567 [Escherichia coli O157:... gi\|194434184, gi... - gi\|194434184\|ref\|ZP_03066452.1\| phospholipase, patatin family [Shigella dysenteriae 1012], gi\|194417... gi\|191167389, gi... - gi\|191167389\|ref\|ZP_03029204.1\| phospholipase, patatin family [Escherichia coli B7A], gi\|190902529\|g... gi\|168797949, gi... - gi\|189379442\|gb\|EDU97858.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC508], gi\|... gi\|209398730, gi... - gi\|209398730\|ref\|YP_002273898.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4115... gi\|208821717, gi... - gi\|208821717\|ref\|ZP_03262037.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4042]... gi\|15834589, gi\|... - gi\|15834589\|ref\|NP_313362.1\| hypothetical protein ECs5335 [Escherichia coli O157:H7], gi\|13364813\|db... gi\|208813537, gi... - gi\|208813537\|ref\|ZP_03254866.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4045]... gi\|209748928, gi... - pir\|\|B86137 hypothetical protein yjjU [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208807415, gi... - gi\|208807415\|ref\|ZP_03249752.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4206]... gi\|189366949, gi... - gi\|189366949\|gb\|EDU85365.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4501], gi... gi\|15804949, gi\|... - gi\|15804949\|ref\|NP_290991.1\| hypothetical protein Z5979 [Escherichia coli O157:H7 EDL933], gi\|125194... gi\|189356068, gi... - gi\|189356068\|gb\|EDU74487.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4401], gi... gi\|168750986, gi... - gi\|188014944\|gb\|EDU53066.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4113], gi... gi\|15834589, gi\|... - gi\|15834589\|ref\|NP_313362.1\| hypothetical protein ECs5335 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168785020, gi... - gi\|189374907\|gb\|EDU93323.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC869], gi\|... gi\|168781666, gi... - gi\|189000734\|gb\|EDU69720.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4076], gi... gi\|168776645, gi... - gi\|187767980\|gb\|EDU31824.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4196], gi... gi\|189363948, gi... - gi\|189363948\|gb\|EDU82367.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. EC4486], gi... gi\|218435152, gi... - gi\|218708055\|ref\|YP_002415574.1\| putative esterase [Escherichia coli UMN026], gi\|218435152\|emb\|CAR16... gi\|217324697, gi... - gi\|217324697\|ref\|ZP_03440781.1\| phospholipase, patatin family [Escherichia coli O157:H7 str. TW14588... gi\|209915102, gi... - gi\|209921843\|ref\|YP_002295927.1\| hypothetical protein ECSE_4652 [Escherichia coli SE11], gi\|20991510... gi\|254796373, gi... - gi\|254796373\|ref\|YP_003081210.1\| predicted esterase [Escherichia coli O157:H7 str. TW14359], gi\|2545...	287.0	[0..1]	[357..1]
gi\|115515859, gi... - gi\|117626735\|ref\|YP_860058.1\| hypothetical protein APECO1_2004 [Escherichia coli APEC O1], gi\|115515...	286.0	[0..1]	[357..1]
gi\|215489689, gi... - gi\|215489689\|ref\|YP_002332120.1\| predicted esterase [Escherichia coli O127:H6 str. E2348/69], gi\|215... gi\|218430329, gi... - gi\|218692765\|ref\|YP_002400977.1\| putative esterase [Escherichia coli ED1a], gi\|218430329\|emb\|CAV1820... gi\|110644814, gi... - gi\|110644814\|ref\|YP_672544.1\| hypothetical protein ECP_4761 [Escherichia coli 536], gi\|110346406\|gb\|... gi\|218373110, gi... - gi\|218703124\|ref\|YP_002410753.1\| putative esterase [Escherichia coli IAI39], gi\|218373110\|emb\|CAR210... gi\|170521883, gi... - gi\|170684165\|ref\|YP_001746832.1\| patatin family phospholipase [Escherichia coli SMS-3-5], gi\|1705218... gi\|190906535, gi... - gi\|191173150\|ref\|ZP_03034682.1\| phospholipase, patatin family [Escherichia coli F11], gi\|190906535\|g...	285.0	[0..1]	[357..1]
gi\|30065615, gi\|... - gi\|30065615\|ref\|NP_839786.1\| hypothetical protein S4680 [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|56480607, gi\|... - gi\|56480607\|ref\|NP_710117.2\| hypothetical protein SF4409 [Shigella flexneri 2a str. 301], gi\|5638415... gi\|110808166, gi... - gi\|110808166\|ref\|YP_691686.1\| hypothetical protein SFV_4411 [Shigella flexneri 5 str. 8401], gi\|1106...	285.0	[0..1]	[357..1]
gi\|82546726, gi\|... - gi\|82546726\|ref\|YP_410673.1\| hypothetical protein SBO_4438 [Shigella boydii Sb227], gi\|81248137\|gb\|A...	285.0	[0..1]	[357..1]
gi\|91214092, gi\|... - gi\|91214092\|ref\|YP_544078.1\| hypothetical protein UTI89_C5147 [Escherichia coli UTI89], gi\|91075666\|...	284.0	[0..1]	[357..13]
gi\|26111699, gi\|... - gi\|26251266\|ref\|NP_757306.1\| hypothetical protein c5460 [Escherichia coli CFT073], gi\|26111699\|gb\|AA... gi\|227837965, gi... - gi\|227885136\|ref\|ZP_04002941.1\| patatin family phospholipase [Escherichia coli 83972], gi\|227837965\|...	284.0	[0..1]	[357..13]
gi\|82779628, gi\|... - gi\|82779628\|ref\|YP_405977.1\| hypothetical protein SDY_4637 [Shigella dysenteriae Sd197], gi\|81243776...	282.0	[0..1]	[357..1]
gi\|62130614, gi\|... - gi\|62182981\|ref\|YP_219398.1\| hypothetical protein SC4411 [Salmonella enterica subsp. enterica serova...	278.0	[0..1]	[357..1]
lcl\|NC_016856.1_... - [gene=yjjU] [protein=putative phosphoesterase] [protein_id=YP_005240906.1] [location=4829743..483081... gi\|205331359, gi... - gi\|205331359\|gb\|EDZ18123.1\| patatin [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. C... gi\|16767804, gi\|... - gi\|16767804\|ref\|NP_463419.1\| putative phosphoesterase [Salmonella typhimurium LT2], gi\|16423128\|gb\|A...	277.0	[0..1]	[357..1]

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Predicted Domain #1

Region A:
Residues: [1-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQRIPVTLG NIAPLSLRPF QPGRIALVCE GGGQRGIFTA GVLDEFMRAQ FNPFDLYLGT  60
   61 SAGAQNLSAF ICNQPGYARK VIMRYTTKRE FFDPLRFVRG GNLIDLDWLV EATASQMPLQ 120
  121 MDTAARLFDS GKSFYMCACR QDDYAPNYFL PTKQNWLDVI RASSAIPGFY RSGVSLEGIN 180
  181 YLDGGISDAI PVKEAARQGA KTLVVIRTVP SQMYYTPQWF KRMERWLGDS SLQPLVNLVQ 240
  241 HHETSYRDIQ QFIEKPPGKL RIFEIYPPKP LHSIALGSRI PALREDYKLG RLCGRYFLAT 300
  301 VGKLLTEKAP LTRHLVPVVT PESIVIPPAP VANDTLVAEV SDAPQANDPT FNNEDLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1oxwA
Description:	Patatin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phospholipase A2 activity	1.98467451720607	bayes_pls_golite062009
phospholipase activity	1.80454369034948	bayes_pls_golite062009
catalytic activity	1.681309422157	bayes_pls_golite062009
lipase activity	1.58686349518315	bayes_pls_golite062009
fatty acid synthase activity	1.20394174397151	bayes_pls_golite062009
[acyl-carrier-protein] S-malonyltransferase activity	0.812816692540436	bayes_pls_golite062009
S-malonyltransferase activity	0.812816692540436	bayes_pls_golite062009
malonyltransferase activity	0.812816692540436	bayes_pls_golite062009
hydrolase activity	0.582505020700489	bayes_pls_golite062009
carboxylesterase activity	0.543259402611534	bayes_pls_golite062009
acyltransferase activity	0.350701756346828	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.295883900540457	bayes_pls_golite062009
S-acyltransferase activity	0.279710514295726	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.208678652576559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: