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View Structure Prediction Details

Protein: TRPC_SYNY3
Organism: Synechocystis sp. PCC 6803
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPC_SYNY3.

Description E-value Query
Range		 Subject
Range
gi|53765692, gi|... - gi|75908147|ref|YP_322443.1| indole-3-glycerol-phosphate synthase [Anabaena variabilis ATCC 29413], ...
 324.0 [0..1] [292..1]
TRPC_TRIEI - Indole-3-glycerol phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=trpC PE=3 SV=1
 322.0 [0..1] [294..1]
gi|17232238, gi|... - gi|17232238|ref|NP_488786.1| indole-3-glycerol-phosphate synthase [Nostoc sp. PCC 7120], gi|17133883...
gi|25291424 - pir||AB2399 indole-3-glycerol phosphate synthase [imported] - Nostoc sp. (strain PCC 7120)
 320.0 [0..1] [291..1]
gi|23130018, gi|... - gi|23130018|ref|ZP_00111839.1| COG0134: Indole-3-glycerol phosphate synthase [Nostoc punctiforme PCC...
 319.0 [0..1] [292..1]
gi|67920093, gi|... - gi|67920093|ref|ZP_00513613.1| Indole-3-glycerol-phosphate synthase [Crocosphaera watsonii WH 8501],...
 314.0 [0..1] [294..1]
TRPC_SYNPX - Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=trpC PE=3 SV=1
 313.0 [0..1] [292..1]
TRPC_PROMP - Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / M...
 310.0 [0..1] [295..1]
TRPC_PROMA - Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=...
TRPC_PROMA - Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus GN=trpC PE=3 SV=1
 309.0 [0..1] [293..1]
TRPC_PROM4 - Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=trpC PE=3 SV=1
 309.0 [0..1] [291..1]
TRPC_SYNSC - Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1
 309.0 [0..1] [294..1]

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Predicted Domain #1
Region A:
Residues: [1-295] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIRRRPPNP PIKVDILQYQ IKHPEAAPRH ILEEIVWHKE KEVAQRRELV PLVKLQSLVK  60
   61 DMTPPLDFVG ALRQSPRQPA LIAEVKKASP SKGIIRADFD PVAIAKAYEA GGANCLSVLT 120
  121 DEKFFQGSFE NLQLVRSAVQ LPLLCKEFII YPYQIYLARS RGADAVLLIA AILSDKDLRY 180
  181 FLKIIEGLGM AALVEVHTLE EMDRVLALDG VQLIGVNNRN LQTFTVDLQT TEDLFAQRRE 240
  241 QLTQGDITLV SESGIYELAD LQRLQQAGAR AVLVGESLVK QPDPQQAIAA LYGEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.0
Match: 1piiA
Description: THREE-DIMENSIONAL STRUCTURE OF THE BIFUNCTIONAL ENZYME PHOSPHORIBOSYLANTHRANILATE ISOMERASE: INDOLEGLYCEROLPHOSPHATE SYNTHASE FROM ESCHERICHIA COLI REFINED AT 2.0 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
tryptophan synthase activity 3.15663465352598 bayes_pls_golite062009
indole-3-glycerol-phosphate synthase activity 3.12120866545322 bayes_pls_golite062009
catalytic activity 2.81275055404078 bayes_pls_golite062009
phosphoribosylanthranilate isomerase activity 2.655130814615 bayes_pls_golite062009
carbon-carbon lyase activity 2.44001937916931 bayes_pls_golite062009
carboxy-lyase activity 1.80978905789979 bayes_pls_golite062009
lyase activity 0.9228652996943 bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity 0.82314869965119 bayes_pls_golite062009
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity 0.302746738903759 bayes_pls_golite062009
isomerase activity 0.14149405165663 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle