YRC Public Data Repository - Protein Structure Prediction

Protein:	SSB_COXBU
Organism:	Coxiella burnetii
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSB_COXBU.

Description	E-value	Query Range	Subject Range
gi\|52840601, gi\|... - gi\|52840601\|ref\|YP_094400.1\| single strand binding protein [Legionella pneumophila subsp. pneumophil...	202.0	[0..1]	[158..4]
gi\|213646761 - gi\|213646761\|ref\|ZP_03376814.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... SSB2_SALTI - Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2 PE=3 SV=1 gi\|213609821 - gi\|213609821\|ref\|ZP_03369647.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|213428139 - gi\|213428139\|ref\|ZP_03360889.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|213161420 - gi\|213161420\|ref\|ZP_03347130.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enteri... gi\|32454454 - gi\|32454454\|gb\|AAP83026.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica se... SSB2_SALTI - Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2 PE=3 SV=1 gi\|224586099, gi... - gi\|224586099\|ref\|YP_002639898.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enter... gi\|29140135, gi\|... - gi\|29144497\|ref\|NP_807839.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica ... gi\|16763010 - gi\|16763010\|ref\|NP_458627.1\| single-strand DNA-binding protein [Salmonella enterica subsp. enterica ...	201.0	[0..1]	[158..1]
gi\|53750177, gi\|... - gi\|54296392\|ref\|YP_122761.1\| single-strand binding protein (SSB) (helix-destabilizing protein) [Legi...	201.0	[0..1]	[158..1]
gi\|75179580, gi\|... - gi\|75179580\|ref\|ZP_00699584.1\| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...	200.0	[0..1]	[158..1]
gi\|54293348, gi\|... - gi\|54293348\|ref\|YP_125763.1\| single-strand binding protein (SSB) (helix-destabilizing protein) [Legi...	200.0	[0..1]	[158..1]
gi\|84780626, gi\|... - gi\|85060106\|ref\|YP_455808.1\| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...	199.0	[0..1]	[158..1]
gi\|147870 - gi\|147870\|gb\|AAA24649.1\| single-strand DNA-binding protein (ssb) [Escherichia coli]	199.0	[0..1]	[158..1]
SSB_BPP1 - Single-stranded DNA-binding protein OS=Enterobacteria phage P1 GN=ssb PE=3 SV=1	198.0	[0..1]	[158..1]
gi\|88812721, gi\|... - gi\|88812721\|ref\|ZP_01127967.1\| Single-strand binding protein [Nitrococcus mobilis Nb-231], gi\|887899...	198.0	[0..1]	[158..1]
gi\|56477626, gi\|... - gi\|56477626\|ref\|YP_159215.1\| single-strand binding protein (SSB) (helix-destabilizing protein) [Arom...	197.0	[0..1]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGVNKVIL IGNLGQDPEV RYTPNGNAVA NVTLATSTTW RDKQTGELQE RTEWHRIAFF  60
   61 NRLAEIVGEY LRKGSKIYIE GSLRTRKWQD KNGVDRYTTE IIANEMHMLD NRGGGNSGNY 120
  121 GNHSEGGASN KQSAPTSSQT PTAGDDSSVA DFDDDIPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.65948797337693	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
binding	0.902189695502298	bayes_pls_golite062009
DNA binding	0.9001707539121	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: