YRC Public Data Repository - Protein Structure Prediction

Protein:	S61B_YARLI, SC61...
Organism:	Yarrowia lipolytica
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S61B_YARLI, SC61....

Description	E-value	Query Range	Subject Range
gi\|44981710 - gi\|44981710\|gb\|AAS51460.1\| ACR234Cp [Ashbya gossypii ATCC 10895] gi\|44981710, gi\|... - gi\|45185920\|ref\|NP_983636.1\| ACR234Cp [Ashbya gossypii ATCC 10895], gi\|44981710\|gb\|AAS51460.1\| ACR23...	114.0	[0..1]	[90..1]
SC61B_KLULA - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / ... SC61B_KLULA, S61... - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis GN=SBH1 PE=3 SV=1, (Q8J2P4) Pro...	108.0	[0..5]	[90..3]
SC6B2_YEAST - Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1... SBH2 - Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulu... ORFP:6100 - YER019C-A, Contig c425 46829-47095 reverse complement gi\|190405581 - gi\|190405581\|gb\|EDV08848.1\| protein transport protein SEC61 beta 2 subunit [Saccharomyces cerevisiae... gi\|151944729 - gi\|151944729\|gb\|EDN62988.1\| conserved protein [Saccharomyces cerevisiae YJM789]	106.0	[0..3]	[89..2]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	101.0	[0..2]	[87..10]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	101.0	[0..2]	[87..10]
SC61B_PONAB - Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 ENSPTRT00000039176 - null tr\|G3H7H4\|G3H7H4... - Protein transport protein Sec61 subunit beta OS=Cricetulus griseus GN=I79_006305 PE=4 SV=1 CCDS6741.1_1 - null SC61B_PONPY - Protein transport protein Sec61 subunit beta - Pongo pygmaeus (Orangutan) SEC61B - Sec61 beta subunit SC61B_CANLF - Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 gi\|149740327 - gi\|149740327\|ref\|XP_001504106.1\| PREDICTED: similar to protein translocation complex beta subunit [E... gi\|109110979 - gi\|109110979\|ref\|XP_001109722.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta] ENSCJAT00000021945 - null	100.0	[0..2]	[87..10]
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	100.0	[0..2]	[87..10]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	100.0	[0..2]	[87..10]
gi\|49524251 - gi\|49524251\|emb\|CAG57842.1\| unnamed protein product [Candida glabrata] gi\|50285041, gi\|... - gi\|50285041\|ref\|XP_444949.1\| hypothetical protein CAGL0A04191g [Candida glabrata CBS138], gi\|4952425...	100.0	[0..3]	[90..2]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	100.0	[0..2]	[87..10]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSAQVPGG PAAQMKRRNN AQRQEAKASQ RPTSTRSVGA GGSSSTMLKL YTDESQGLKV  60
   61 DPVVVMVLSL GFIFSVVALH ILAKVSTKLL G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
signal recognition particle binding	2.95505619670326	bayes_pls_golite062009
ribonucleoprotein binding	2.22016171942506	bayes_pls_golite062009
transporter activity	1.45141362740696	bayes_pls_golite062009
binding	1.11882914670932	bayes_pls_golite062009
protein transporter activity	1.04187773839372	bayes_pls_golite062009
protein binding	0.921815813786072	bayes_pls_golite062009
substrate-specific transporter activity	0.897914093688297	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.180368214285052	bayes_pls_golite062009
pyrophosphatase activity	0.143940836293489	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.135270049620812	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.132655147655206	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: