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View Structure Prediction Details

Protein: RS9_AGRFC
Organism: Agrobacterium tumefaciens str. C58
Length: 155 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS9_AGRFC.

Description E-value Query
Range		 Subject
Range
gi|82947496, gi|... - gi|83312655|ref|YP_422919.1| 30S ribosomal protein S9 [Magnetospirillum magneticum AMB-1], gi|829474...
 206.0 [0..1] [155..1]
gi|23016249 - gi|23016249|ref|ZP_00056007.1| COG0103: Ribosomal protein S9 [Magnetospirillum magnetotacticum MS-1]
 205.0 [0..1] [155..1]
RS9_SINMW - 30S ribosomal protein S9 OS=Sinorhizobium medicae (strain WSM419) GN=rpsI PE=3 SV=1
 203.0 [0..1] [155..1]
RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti (strain 1021) GN=rpsI PE=3 SV=1
RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti GN=rpsI PE=3 SV=1
 203.0 [0..1] [155..1]
RS9_BARHE - 30S ribosomal protein S9 OS=Bartonella henselae GN=rpsI PE=3 SV=1
RS9_BARHE - 30S ribosomal protein S9 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsI ...
 201.0 [0..1] [155..1]
RS9_BARBK - 30S ribosomal protein S9 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsI PE=3 SV=1
 201.0 [0..1] [155..1]
RS9_RHIL3 - 30S ribosomal protein S9 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsI PE=3 SV=1
gi|241204056, gi... - gi|241204056|ref|YP_002975152.1| ribosomal protein S9 [Rhizobium leguminosarum bv. trifolii WSM1325]...
 200.0 [0..1] [155..1]
RS9_RHORT - 30S ribosomal protein S9 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 436...
gi|48763062 - ref|ZP_00267618.1| COG0103: Ribosomal protein S9 [Rhodospirillum rubrum]
 198.0 [0..3] [155..4]
gi|110633516, gi... - gi|69277676|ref|ZP_00613011.1| Ribosomal protein S9 [Mesorhizobium sp. BNC1], gi|68191553|gb|EAN0620...
 197.0 [0..1] [155..1]
RS9_RHIEC - 30S ribosomal protein S9 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsI PE=3 SV=1
 197.0 [0..1] [155..1]

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Predicted Domain #1
Region A:
Residues: [1-155] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLSSLKDL APASEASAPV HVRKVDTLGR SYATGKRKNA VARVWVKAGS GKIIINGRDF  60
   61 TTYFARPVLQ MILQQPLVAA ARAGQFDIIA TVAGGGLSGQ AGAVRHGVSK ALTYFEPGLR 120
  121 PVLKKGGFLT RDSRVVERKK YGKAKARRSF QFSKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 1vs5I
Description: No description for 1vs5I was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 7.32829196949019 bayes_pls_golite062009
structural molecule activity 6.75880680396215 bayes_pls_golite062009
3'-5'-exoribonuclease activity 1.56111033008721 bayes_pls_golite062009
RNA binding 1.40868766468494 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.35935222635763 bayes_pls_golite062009
exoribonuclease activity 1.31205157616894 bayes_pls_golite062009
3'-5' exonuclease activity 1.10842504252923 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
nucleic acid binding 0.555181608481691 bayes_pls_golite062009
binding 0.478154009944658 bayes_pls_golite062009
transcription regulator activity 0.368412900600617 bayes_pls_golite062009
ribonuclease activity 0.19921800066954 bayes_pls_golite062009
DNA binding 0.0880977286684361 bayes_pls_golite062009
mRNA binding 0.0491645692672305 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 6.9430052008157E-5 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle