YRC Public Data Repository - Protein Structure Prediction

Protein:	GYRI_ECOLI
Organism:	Escherichia coli
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYRI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46448105, gi\|... - gi\|46578693\|ref\|YP_009501.1\| AraC family transcriptional regulator [Desulfovibrio vulgaris subsp. vu... gi\|241879650, gi... - gi\|241907919\|ref\|ZP_04792493.1\| transcriptional regulator, AraC family [Desulfovibrio vulgaris RCH1]...	152.0	[0..1]	[154..170]
gi\|34499596, gi\|... - gi\|34499596\|ref\|NP_903811.1\| AraC family transcription regulator [Chromobacterium violaceum ATCC 124...	146.0	[0..1]	[153..132]
gi\|88934446, gi\|... - gi\|88934446\|ref\|ZP_01140089.1\| Helix-turn-helix, AraC type [Geobacter uraniumreducens Rf4], gi\|88918...	144.0	[0..1]	[152..179]
gi\|25350135, gi\|... - gi\|25350135\|pir\|\|AG0888 probable AraC-family transcription regulator STY3352 [imported] - Salmonella... gi\|213424350 - gi\|213424350\|ref\|ZP_03357174.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213647441 - gi\|213647441\|ref\|ZP_03377494.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|29143438, gi\|... - gi\|29143438\|ref\|NP_806780.1\| AraC family transcription regulator [Salmonella enterica subsp. enteric... gi\|213973981 - gi\|213973981\|ref\|ZP_03401240.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|16761951 - gi\|16761951\|ref\|NP_457568.1\| AraC family transcription regulator [Salmonella enterica subsp. enteric... gi\|214001849 - gi\|214001849\|ref\|ZP_03412584.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213027199 - gi\|213027199\|ref\|ZP_03341646.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213417333 - gi\|213417333\|ref\|ZP_03350475.1\| AraC family transcription regulator [Salmonella enterica subsp. ente...	144.0	[0..1]	[153..134]
gi\|197244088, gi... - gi\|197265833\|ref\|ZP_03165907.1\| transcription activator, effector binding [Salmonella enterica subsp... gi\|205331279, gi... - gi\|205331279\|gb\|EDZ18043.1\| transcription activator, effector binding [Salmonella enterica subsp. en... gi\|16421731, gi\|... - gi\|16766475\|ref\|NP_462090.1\| putative regulatory protein [Salmonella typhimurium LT2], gi\|16421731\|g... lcl\|NC_016856.1_... - [gene=STM14_3847] [protein=putative regulatory protein] [protein_id=YP_005239346.1] [location=comple...	143.0	[0..1]	[153..134]
gi\|70728950, gi\|... - gi\|70728950\|ref\|YP_258684.1\| AraC family transcriptional regulator [Pseudomonas fluorescens Pf-5], g...	143.0	[0..1]	[154..160]
gi\|62129322, gi\|... - gi\|62181689\|ref\|YP_218106.1\| AraC family regulatory protein [Salmonella enterica subsp. enterica ser... gi\|224584975, gi... - gi\|224584975\|ref\|YP_002638774.1\| possible AraC-family transcriptional regulator [Salmonella enterica... gi\|194446792, gi... - gi\|194446792\|ref\|YP_002042440.1\| transcription activator, effector binding [Salmonella enterica subs...	143.0	[0..1]	[153..134]
gi\|157067181, gi... - gi\|75196077\|ref\|ZP_00706147.1\| COG3449: DNA gyrase inhibitor [Escherichia coli HS], gi\|157161501\|ref...	141.0	[0..1]	[157..1]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYEIKQEEK RTVAGFHLVG PWEQTVKKGF EQLMMWVDSK NIVPKEWVAV YYDNPDETPA  60
   61 EKLRCDTVVT VPGYFTLPEN SEGVILTEIT GGQYAVAVAR VVGDDFAKPW YQFFNSLLQD 120
  121 SAYEMLPKPC FEVYLNNGAE DGYWDIEMYV AVQPKHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1jyhA
Description:	Gyrase inhibitory protein GyrI (SbmC, YeeB)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits