| Protein: | gi|151944779 |
| Organism: | Saccharomyces cerevisiae YJM789 |
| Length: | 505 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151944779.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..505] | [1..505] |
|
|
0.0 | [80..505] | [1..421] |
|
Region A: Residues: [1-211] |
1 11 21 31 41 51
| | | | | |
1 MIDDTENSKI HLEGSHKTGK YTGYGTTHKI RAQLNFNDEK KWKKFSSRRL ELIDSFGLSQ 60
61 HKASEQDDNI RQIATILRSE FEYPDTFSAE FEKLVTAAVQ SVRRNRKRSK KKLLDSKKKI 120
121 ARGKVQKIPL SPPSSSNMGS CSASNASSSD EEASVKEEPA EHALPSLNTI TSQKLLPYPN 180
181 GRTLPPVPTQ VRSLLKKNAS LLRDPSAPYA H
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [212-444] |
1 11 21 31 41 51
| | | | | |
1 GGDEKLQKFD IEDQPLESEQ EYDFIAKSII VEIVNNAIPL PEQIQRDKFI RPNLTKKKGC 60
61 QSKVVISNNL RKLILSKIHN SRTCLEMSKD ERNLDSFANL ETLGKNSLMA SISLVVENSF 120
121 SHLPSSTKQY LTERLSSIEF LTILSQRLFM PATRQLFADL SQEKIQVRVL NLILGSLVKD 180
181 YGFDASLAPI NEIIYHMTLH QYPLVCSNKQ SNPMRPHSTS EVLSAHSSTK DAS
|
| Detection Method: | |
| Confidence: | 7.57 |
| Match: | 1jfzA |
| Description: | RNase III endonuclease catalytic domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.56857846292068 | bayes_pls_golite062009 |
| binding | 3.16671084167938 | bayes_pls_golite062009 |
| DNA binding | 2.46976707655498 | bayes_pls_golite062009 |
| transcription regulator activity | 2.36798074064997 | bayes_pls_golite062009 |
| RNA binding | 1.64815102811033 | bayes_pls_golite062009 |
| protein binding | 1.33798788677218 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.28842676742386 | bayes_pls_golite062009 |
| transcription factor activity | 1.27008996745235 | bayes_pls_golite062009 |
| structural molecule activity | 1.15978347169403 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.402046758389082 | bayes_pls_golite062009 |
| transcription activator activity | 0.389298959802427 | bayes_pls_golite062009 |
| transcription repressor activity | 0.134687687018266 | bayes_pls_golite062009 |
| catalytic activity | 0.00430305721638241 | bayes_pls_golite062009 |
|
Region A: Residues: [445-505] |
1 11 21 31 41 51
| | | | | |
1 TPGKEEPRVT RSSTSADSTI ITLPSIEVPN TYDDDRLKML SAISLQIENS TFSKPFSTIS 60
61 K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.408 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.578 | a.30.1 | ROP protein |
| View | Download | 0.555 | a.5.2 | UBA-like |
| View | Download | 0.466 | a.140.1 | LEM domain |
| View | Download | 0.507 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.362 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.293 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.292 | d.58.49 | YajQ-like |
| View | Download | 0.289 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.263 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.232 | d.52.5 | Probable GTPase Der, C-terminal domain |
