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View Structure Prediction Details

Protein: gi|151941663
Organism: Saccharomyces cerevisiae YJM789
Length: 212 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151941663.

Description E-value Query
Range
Subject
Range
gi|13359203 - gi|13359203|dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
8.0E-49 [1..211] [14..214]
gi|190409694 - gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces cerevi...
gi|151941663 - gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
RPC8_YEAST - DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
RPC25 - RNA polymerase III subunit C25, required for transcription initiation; forms a heterodimer with Rpc1...
1.0E-47 [1..212] [1..212]
RPC8_MOUSE - DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2
gi|149065819, gi... - gi|27662966|ref|XP_216998.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...
3.0E-44 [1..211] [1..201]
CG7339-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG7339 (CG7339, FBgn0036188). It is a protein...
gi|220959072, gi... - gi|220959072|gb|ACL92079.1| CG7339-PA [synthetic construct], gi|220949964|gb|ACL87525.1| CG7339-PA [...
5.0E-38 [1..212] [1..213]
gi|15621365, gi|... - gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7], gi...
5.0E-36 [1..190] [1..183]
rpc25 - DNA-directed RNA polymerase III complex subunit Rpc25
RPC8_SCHPO - DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
9.0E-36 [1..212] [1..203]
RPOE_SULAC - DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JC...
RPOE_SULAC - DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius GN=rpoE PE=1 SV=2
2.0E-34 [1..191] [1..184]
gi|15678292, gi|... - gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter thermautotro...
gi|7447211 - pir||C69133 DNA-dependent RNA polymerase, subunit E' - Methanobacterium thermoautotrophicum (strain ...
5.0E-34 [1..190] [1..184]
RPE1_METJA, RPOE... - DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus jannaschii GN=rpoE1 PE=1 SV=1, (Q57840)...
RPOE1_METJA - DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 266...
1.0E-33 [1..188] [1..183]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFILSKIADL VRIPPDQFHR DTISAITHQL NNKFANKIIP NVGLCITIYD LLTVEEGQLK  60
   61 PGDGSSYINV TFRAVVF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.37734
Match: 1go3E_
Description: C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [78-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPFLGEIVTG WISKCTAEGI KVSLLGIFDD IFIPQNMLFE GCYYTPEESA WIWPMDEETK  60
   61 LYFDVNEKIR FRIEREVFVD VKPKSPKERE LEERAQLENE IEGKNEETPQ NEKPPAYALL 120
  121 GSCQTDGMGL VSWWE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.37734
Match: 1go3E_
Description: C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle