YRC Public Data Repository - Protein Structure Prediction

Protein:	GLPK_LISMO
Organism:	Listeria monocytogenes
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLPK_LISMO.

Description	E-value	Query Range	Subject Range
GLPK2_THEMA, GLK... - Glycerol kinase 2 OS=Thermotoga maritima GN=glpK2 PE=3 SV=2, (Q9X1E4) Glycerol kinase 2 (EC 2.7.1.30... GLPK2_THEMA - Glycerol kinase 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=glpK2 ...	663.0	[0..3]	[497..1]
GLPK_CARHZ - Glycerol kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=gl...	653.0	[0..1]	[497..1]
gi\|254479176, gi... - gi\|254479176\|ref\|ZP_05092524.1\| glycerol kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348899... GLPK_CALS4 - Glycerol kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 ... GLPK_THETN - Glycerol kinase OS=Thermoanaerobacter tengcongensis GN=glpK PE=3 SV=1	650.0	[0..2]	[496..1]
gi\|7434247 - gi\|7434247\|pir\|\|C72254 glycerol kinase - Thermotoga maritima (strain MSB8) gi\|15644181, gi\|... - gi\|4981995\|gb\|AAD36500.1\|AE001795_3 glycerol kinase [Thermotoga maritima MSB8], gi\|15644181\|ref\|NP_2...	644.0	[0..3]	[485..1]
GLPK_BACSU - Glycerol kinase OS=Bacillus subtilis GN=glpK PE=1 SV=1 gi\|2633252, gi\|1... - gi\|2633252\|emb\|CAB12757.1\| glycerol kinase [Bacillus subtilis subsp. subtilis str. 168], gi\|16077994...	643.0	[0..2]	[497..1]
gi\|242257967, gi... - gi\|242257967\|ref\|ZP_04802809.1\| glycerol kinase [Thermoanaerobacter sp. X513], gi\|242230500\|gb\|EES32... GLPK_THEPX - Glycerol kinase OS=Thermoanaerobacter sp. (strain X514) GN=glpK PE=3 SV=1	640.0	[0..2]	[496..1]
GLPK_BACHK - Glycerol kinase OS=Bacillus thuringiensis subsp. konkukian GN=glpK PE=3 SV=1 gi\|228814930, gi... - gi\|228944758\|ref\|ZP_04107122.1\| Glycerol kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]... gi\|228913716, gi... - gi\|228913716\|ref\|ZP_04077342.1\| Glycerol kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1... GLPK_BACC0 - Glycerol kinase OS=Bacillus cereus (strain AH820) GN=glpK PE=3 SV=1 GLPK_BACAC - Glycerol kinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=glpK PE=3 SV=1 GLPK_BACC7 - Glycerol kinase OS=Bacillus cereus (strain AH187) GN=glpK PE=3 SV=1 gi\|190566637, gi... - gi\|190566637\|ref\|ZP_03019554.1\| glycerol kinase [Bacillus anthracis Tsiankovskii-I], gi\|190562189\|gb... gi\|254682792 - gi\|254682792\|ref\|ZP_05146653.1\| glycerol kinase [Bacillus anthracis str. CNEVA-9066] gi\|228645684, gi... - gi\|229137827\|ref\|ZP_04266429.1\| Glycerol kinase [Bacillus cereus BDRD-ST26], gi\|228645684\|gb\|EEL0191... gi\|229120647, gi... - gi\|229120647\|ref\|ZP_04249891.1\| Glycerol kinase [Bacillus cereus 95/8201], gi\|228662820\|gb\|EEL18416.... gi\|228693308, gi... - gi\|229090078\|ref\|ZP_04221329.1\| Glycerol kinase [Bacillus cereus Rock3-42], gi\|228693308\|gb\|EEL47018... gi\|254758584 - gi\|254758584\|ref\|ZP_05210611.1\| glycerol kinase [Bacillus anthracis str. Australia 94] gi\|254753487 - gi\|254753487\|ref\|ZP_05205523.1\| glycerol kinase [Bacillus anthracis str. Vollum] GLPK_BACHK - Glycerol kinase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=glpK PE=3 SV=1 gi\|254740147 - gi\|254740147\|ref\|ZP_05197839.1\| glycerol kinase [Bacillus anthracis str. Kruger B] gi\|254725580 - gi\|254725580\|ref\|ZP_05187362.1\| glycerol kinase [Bacillus anthracis str. A1055]	638.0	[0..2]	[497..1]
GLPK_BACAH - Glycerol kinase OS=Bacillus thuringiensis (strain Al Hakam) GN=glpK PE=3 SV=1 gi\|229183337, gi... - gi\|229183337\|ref\|ZP_04310565.1\| Glycerol kinase [Bacillus cereus BGSC 6E1], gi\|228600121\|gb\|EEK57713... gi\|196024832, gi... - gi\|196044193\|ref\|ZP_03111429.1\| glycerol kinase [Bacillus cereus 03BB108], gi\|196024832\|gb\|EDX63503.... GLPK_BACC3 - Glycerol kinase OS=Bacillus cereus (strain 03BB102) GN=glpK PE=3 SV=1 GLPK_BACCZ - Glycerol kinase OS=Bacillus cereus (strain ZK / E33L) GN=glpK PE=3 SV=1	638.0	[0..2]	[497..1]
GLPK_BACAN - Glycerol kinase OS=Bacillus anthracis GN=glpK PE=3 SV=1 gi\|30261150, gi\|... - gi\|30261150\|ref\|NP_843527.1\| glycerol kinase [Bacillus anthracis str. Ames], gi\|30254764\|gb\|AAP25013... gi\|21398961, gi\|... - gi\|65318420\|ref\|ZP_00391379.1\| COG0554: Glycerol kinase [Bacillus anthracis str. A2012], ref\|NP_6549... gi\|49183982, gi\|... - gi\|49183982\|ref\|YP_027234.1\| glycerol kinase [Bacillus anthracis str. Sterne], gi\|49177909\|gb\|AAT532... GLPK_BACAA - Glycerol kinase OS=Bacillus anthracis (strain A0248) GN=glpK PE=3 SV=1 gi\|47501453, gi\|... - gi\|47526305\|ref\|YP_017654.1\| glycerol kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501453\|...	638.0	[0..2]	[497..1]
gi\|47094262, gi\|... - gi\|47094262\|ref\|ZP_00231971.1\| glycerol kinase [Listeria monocytogenes str. 4b H7858], gi\|47017368\|g... GLPK_LISMF - Glycerol kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=glpK PE=3 SV=1 GLPK_LISMC - Glycerol kinase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=glpK PE=3 SV=1 GLPK_LISMC - Glycerol kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=glpK PE=3 SV=1 gi\|255522335 - gi\|255522335\|ref\|ZP_05389572.1\| glycerol kinase [Listeria monocytogenes FSL J1-175] gi\|254931473, gi... - gi\|254931473\|ref\|ZP_05264832.1\| glycerol kinase [Listeria monocytogenes HPB2262], gi\|153202461\|ref\|Z... gi\|254824403 - gi\|254824403\|ref\|ZP_05229404.1\| glycerol kinase [Listeria monocytogenes FSL J1-194]	638.0	[0..1]	[497..1]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKYILALD QGTTSSRAMI IDEEGEVIGV AQEEFDQIFP KPGWVEHNAN EIWASILAVI  60
   61 AGVLLKTNIS SKEIAGIGIT NQRETTVIWD KESGNPIYNA IVWQSRQTED ICKQLRKDGY 120
  121 EDTIRSKTGL LIDPYFAGTK ARWILDHVDG AQERAEKGEL LFGTIDTWLV WKLTGGRAHI 180
  181 TDYSNASRTL LYNIYDLEWD DELLKMLNIP KAMLPEVRPS SEVYADTVPY HFFGEEVPVA 240
  241 GIAGDQQAAL FGQGCFEKGM AKNTYGTGCF LLMNTGEKAV RSENGLLTTL AWGIDGKVEY 300
  301 ALEGSIFVAG SAIQWLRDGL RMVRQSSDSE NYASRIESSD GVYVVPAFVG LGAPYWDSDV 360
  361 RGAVFGLTRG TEKEQFIRAT LESLAYQTRD VLYAMEQDSG ISLKTLRVDG GASANNFLMQ 420
  421 FQSDILGVPV ERPENKETTV LGAAFLAGLA VGVWKDKNEI KKHWKLDKRF EVEMKEEQRE 480
  481 DLYEGWHKAV KAAQAFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	179.0
Match:	2p3rA
Description:	No description for 2p3rA was found.

Predicted functions:

Term	Confidence	Notes
glycerol kinase activity	5.25911418019759	bayes_pls_golite062009
carbohydrate kinase activity	2.33338276303563	bayes_pls_golite062009
binding	1.92007657015464	bayes_pls_golite062009
hexokinase activity	1.70516840340504	bayes_pls_golite062009
glucose binding	1.58717365638543	bayes_pls_golite062009
protein binding	0.856838411407636	bayes_pls_golite062009
glucokinase activity	0.47468456642723	bayes_pls_golite062009
kinase activity	0.460541310603011	bayes_pls_golite062009
sugar binding	0.44352406324938	bayes_pls_golite062009
nucleic acid binding	0.413093555819235	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.381597272143844	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.324655711623803	bayes_pls_golite062009
catalytic activity	0.296484721581333	bayes_pls_golite062009
transcription regulator activity	0.285445761922116	bayes_pls_golite062009
DNA binding	0.279711618446837	bayes_pls_golite062009
monosaccharide binding	0.20435276425198	bayes_pls_golite062009
hydrolase activity	0.13181840194556	bayes_pls_golite062009
transferase activity	0.105619024604158	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: