| Protein: | gi|153997648, gi... |
| Organism: | Yersinia pestis CA88-4125 |
| Length: | 875 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153997648, gi....
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
|
0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
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0.0 | [1..875] | [1..875] |
|
|
0.0 | [1..875] | [1..875] |
|
|
0.0 | [1..875] | [1..875] |
|
Region A: Residues: [1-459] |
1 11 21 31 41 51
| | | | | |
1 MSKSTAEIRQ AFLDFFHSKG HQVVSSSTLV PNNDPTLLFT NAGMNQFKDV FLGLDKRAYS 60
61 RATTSQRCVR AGGKHNDLEN VGYTARHHTF FEMLGNFSFG DYFKHDAINF AWELLTSEQW 120
121 FNLPKEKLWV TVYETDDEAY NIWANEVGVP HERIIRIGDN KGGAFASDNF WQMGDTGPCG 180
181 PCSEIFFDHG DHIWGGPPGS AEEDGDRYIE IWNIVFMQFN RQSDGTMLPL PKPSVDTGMG 240
241 LERIAAVLQH VNSNYEIDLF RDLIAAVADV TGATDLSSKS LRVIADHIRS CAFLISDGVI 300
301 PSNENRGYVL RRIIRRAIRH GNMLGAKETF FYKLVAPLIA VMGPAAAELK QQQAMVEQVL 360
361 KTEEEQFART LERGLALLDD ELSKLTGDTL DGETAFRLYD TYGFPVDLTA DVCRERNLKV 420
421 DEAGFEQAME AQRRRARESS GFGADYNSLI RVDSASQFS
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1riqA |
| Description: | The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.89468709683036 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 7.89468709683036 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.88410036819636 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 6.00693881794242 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 2.99105702052936 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.46505535069103 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.29229136935761 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 1.72324031407565 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| transcription regulator activity | 1.47976803533584 | bayes_pls_golite062009 |
| nucleic acid binding | 1.30216701059664 | bayes_pls_golite062009 |
| DNA binding | 1.1862497958336 | bayes_pls_golite062009 |
| binding | 1.11470390774037 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 0.921492123574877 | bayes_pls_golite062009 |
| transcription repressor activity | 0.80781620905336 | bayes_pls_golite062009 |
| transcription factor activity | 0.566858624145031 | bayes_pls_golite062009 |
| RNA binding | 0.0221706730298825 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.00572514744734753 | bayes_pls_golite062009 |
|
Region A: Residues: [460-526] |
1 11 21 31 41 51
| | | | | |
1 GYDHVQQHAT VTALFRNGEA VDEIHAGEEA VVVLNRTPFY GESGGQVGDK GELKNATATF 60
61 SVTDTQK
|
| Detection Method: | |
| Confidence: | 36.69897 |
| Match: | 2e1bA |
| Description: | No description for 2e1bA was found. |
|
Region A: Residues: [527-796] |
1 11 21 31 41 51
| | | | | |
1 YGQAIGHVGI LTTGTLRVNH SVEALVDVVR RNRIRLNHSA THLLHAALRN VLGEHVAQKG 60
61 SLVNDKYLRF DFSHFEAMKP EQIRLVEDLV NEQIRRNMPV QTEVMELDAA KEKGAMALFG 120
121 EKYDDQVRVL TMGDFSTELC GGTHASRTGD IGLFRILTES GTAAGIRRIE AVTGEGAIAL 180
181 LHQQSDLLQD VAHLVKGDIH NLADKVRAVL DRSKMLEREL QQLKDQQAAQ ESASLSSSAK 240
241 LINGVKLLVS QLDNVEPKML RTMVDDLKNQ
|
| Detection Method: | |
| Confidence: | 60.0 |
| Match: | 1qf6A |
| Description: | Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [797-875] |
1 11 21 31 41 51
| | | | | |
1 LGSAIIVLAT TADDKVSLIV GVTKDLTGKV KAGELIADIA QQVGGKGGGR PDMAQAGGTD 60
61 VQALPAALAS VEAWVASRM
|
| Detection Method: | |
| Confidence: | 20.920819 |
| Match: | PF02272.10 |
| Description: | No description for PF02272.10 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.535 | 0.328 | zinc ion binding | a.39.1 | EF-hand |
| View | Download | 0.466 | 0.005 | aminoacyl-tRNA ligase activity | d.15.2 | CAD & PB1 domains |
| View | Download | 0.460 | 0.004 | aminoacyl-tRNA ligase activity | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.657 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.483 | N/A | N/A | a.105.1 | FIS-like |
