YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIG_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIG_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|77381767, gi\|... - gi\|77457764\|ref\|YP_347269.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf0-1], gi\|77...	0.0	[1..338]	[1..339]
gi\|152987829, gi... - gi\|94415966\|ref\|ZP_01295798.1\| hypothetical protein PaerP_01002295 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..338]	[1..338]
gi\|70729031, gi\|... - gi\|70729031\|ref\|YP_258765.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf-5], gi\|683...	0.0	[1..338]	[1..339]
gi\|125972987, gi... - gi\|67875411\|ref\|ZP_00504751.1\| Flagellar motor switch protein FliG [Clostridium thermocellum ATCC 27...	0.0	[5..338]	[6..339]
gi\|63257392, gi\|... - gi\|66046685\|ref\|YP_236526.1\| flagellar motor switch protein G [Pseudomonas syringae pv. syringae B72...	0.0	[1..338]	[1..338]
gi\|95111807 - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG... gi\|104782820, gi... - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG...	0.0	[1..338]	[1..339]
gi\|148546738, gi... - gi\|82738783\|ref\|ZP_00901608.1\| Flagellar motor switch protein FliG [Pseudomonas putida F1], gi\|82714...	0.0	[1..338]	[1..339]
gi\|28869163, gi\|... - gi\|28869163\|ref\|NP_791782.1\| flagellar motor protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927861, gi... - gi\|213967560\|ref\|ZP_03395708.1\| flagellar motor switch protein G [Pseudomonas syringae pv. tomato T1... tr\|Q884X7\|Q884X7... - Flagellar motor switch protein FliG OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliG PE=3 ... gi\|71555805, gi\|... - gi\|71735252\|ref\|YP_275540.1\| flagellar motor switch protein G [Pseudomonas syringae pv. phaseolicola...	0.0	[8..338]	[3..333]
gi\|120554913, gi... - gi\|77953742\|ref\|ZP_00818147.1\| Flagellar motor switch protein FliG [Marinobacter aquaeolei VT8], gi\|...	0.0	[4..337]	[14..347]
gi\|23099011, gi\|... - gi\|23099011\|ref\|NP_692477.1\| flagellar motor switch protein G [Oceanobacillus iheyensis HTE831], gi\|...	0.0	[5..338]	[3..336]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENRLAAKL TKVDKAAILL LSLGETDAAQ VLRHMGPKEV QRVGVAMASM RNVHREQVEQ  60
   61 VMGEFVEVVG DQTSLGVGAD GYIRKMLTQA LGEDKANNLI DRILLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	2ouxA
Description:	No description for 2ouxA was found.

Predicted Domain #2

Region A:
Residues: [107-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTSGLDSLK WMEPRAVADV IRYEHPQIQA IVVAYLDPDQ AAEVLSHFDH KVRLDIVLRV  60
   61 SSLNTVQPSA LKELNLILEK QFAGNSNATR TTMGGVKRAA DIMNYLDSSI EGQLMDSIRE 120
  121 VDEDLSGQIE DLMFVFDNLA DVDDRGIQAL LREVSSDVLV LALKGSDEAI REKVFKNMSK 180
  181 RAAELLRDDL EAKGPVRVSE VEGAQKEILT IARRMAESGD IVLGGKGGEE MI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	2.67404852673323	bayes_pls_golite062009
binding	0.827983811500883	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.809819809521648	bayes_pls_golite062009
pyrophosphatase activity	0.766845130042953	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.747495412028734	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.746509234796674	bayes_pls_golite062009
protein binding	0.331391148906732	bayes_pls_golite062009
hydrolase activity	0.00297875768409188	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: