| Protein: | SO9020 |
| Organism: | Shewanella oneidensis |
| Length: | 318 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO9020.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..1] | [306..1] |
|
|
300.0 | [0..13] | [315..29] |
|
|
293.0 | [0..1] | [316..1] |
|
|
290.0 | [0..1] | [316..43] |
|
|
288.0 | [0..1] | [316..1] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MKTSSYLLKA GVDYPTNWDE FVDWFHDEQS CTSYLYALRW PNGFICPSCS SHQSPYQLSN 60
61 GKLKCHACRF QCSVTSSTLF DKTRTPMKSW FAAVWFITNQ K
|
| Detection Method: |  |
| Confidence: | 1.09 |
| Match: | 2ctdA |
| Description: | Solution structure of two zf-C2H2 domains from human Zinc finger protein 512 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 1.30574976114218 | bayes_pls_golite062009 |
| DNA binding | 1.22781671732945 | bayes_pls_golite062009 |
| transcription regulator activity | 1.11045188903413 | bayes_pls_golite062009 |
| binding | 1.0649612944442 | bayes_pls_golite062009 |
| transposase activity | 0.982392863753235 | bayes_pls_golite062009 |
| catalytic activity | 0.633447548613749 | bayes_pls_golite062009 |
| transcription factor activity | 0.291300043056865 | bayes_pls_golite062009 |
|
Region A: Residues: [102-161] |
1 11 21 31 41 51
| | | | | |
1 NGVSALGVQR LLGLGSYQTA WSLMHKLRYA MVDPERDKLS GIVEVDETLI GGVIPKSSIK 60
61
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-318] |
1 11 21 31 41 51
| | | | | |
1 NQQGKRKAIV LVAVELLSPS GFGRIRLRQV ESATKEHIHQ FIQDVIEPGS TICSDGSQAY 60
61 KQIDKKGYKH NRMVHLGSSV PAHETMAGVH RVSSLCKRWL LGTYQGAVKA KQLDYYLDEF 120
121 TFRFNRRKSD SRGLLFYRLL EQAVRSKPIT YQSIKNR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
