| Protein: | SO0840 |
| Organism: | Shewanella oneidensis |
| Length: | 1517 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0840.
| Description | E-value | Query Range |
Subject Range |
|
|
1072.0 | [0..1] | [1517..1] |
|
|
1070.0 | [0..1] | [1517..1] |
|
|
1048.0 | [0..1] | [1517..1] |
|
|
1046.0 | [0..1] | [1517..1] |
|
|
1009.0 | [0..1] | [1407..1] |
|
|
983.0 | [0..1] | [1517..1] |
|
|
981.0 | [0..1] | [1512..1] |
|
|
977.0 | [0..1] | [1514..1] |
|
|
967.0 | [0..1] | [1517..1] |
|
|
800.0 | [0..1] | [1153..1] |
|
Region A: Residues: [1-305] |
1 11 21 31 41 51
| | | | | |
1 MTSNNQPKHM TQAQTPDPLF LQAEHLAKDF SLFPKHSKQS LSEEIKGLLN DDAIQANLKD 60
61 LASLDVDGYV AKVIQPTQDK GRPGAKRIIA DLKGRLITET HLGSFYSAEV ELNFGSRTRR 120
121 IGFIAQERTT ANGAWMPEHH YAACKAIRHF AELSMPIVYL IDTPGADAGE VANSQNQAHS 180
181 ISKAIAESAN VDVPTVGIVI GAGYSGGAIP LAAANILLSL RDGIFNTIQP QGLQSIARKY 240
241 NLSWQECAKS VGVSPEELYT SGCIDGIIDF SPGDRDERQH NLRRAIISSI EAVERAAVNF 300
301 VRESK
|
| Detection Method: |  |
| Confidence: | 85.39794 |
| Match: | 1vrgA |
| Description: | Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| acetyl-CoA carboxylase activity | 10.6452464693016 | bayes_pls_golite062009 |
| CoA carboxylase activity | 10.4560118435089 | bayes_pls_golite062009 |
| ligase activity, forming carbon-carbon bonds | 10.291155621143 | bayes_pls_golite062009 |
| ligase activity | 5.44906329604668 | bayes_pls_golite062009 |
| biotin carboxylase activity | 4.73758144982083 | bayes_pls_golite062009 |
| enoyl-CoA hydratase activity | 2.20341273353803 | bayes_pls_golite062009 |
| catalytic activity | 1.46154163027498 | bayes_pls_golite062009 |
| 3-hydroxyacyl-CoA dehydrogenase activity | 0.71437881404683 | bayes_pls_golite062009 |
| dodecenoyl-CoA delta-isomerase activity | 0.712418056146834 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, transposing C=C bonds | 0.0918189681606029 | bayes_pls_golite062009 |
|
Region A: Residues: [306-403] |
1 11 21 31 41 51
| | | | | |
1 DLREHYDRSL ARFLNPSKNL MALELNAELA VATSPTNHHN LFGSAYRYLR YLTLRSRIHS 60
61 ISQEQYGRLS RVSVPEGDLL ARIQQEQDRV FQAWLASP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [404-624] |
1 11 21 31 41 51
| | | | | |
1 DKLVYDEDLN KLWANFIAKR DEISTERNML TRFILGEPKE NYKKARKALL FNISWSLYHR 60
61 WKSNAANNFK GLIQHLENLP KSVTQAKWPE LNQLTVLDVV VNDELREDFI WQCHNILIFN 120
121 SLYDNVVGSL ASIAKEAMMS KSLSRNSVNN LLHKSIDHAL STQDTANDKA KFYKWLKYFM 180
181 GQSNRADLLV RVEQWKSVGF PQLNDSLFVI LTYFFERLLP E
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [625-677] |
1 11 21 31 41 51
| | | | | |
1 YFDSESDHSK YTGAINPVRI GRRKDFWNRL TMGYQDLLIQ KVLRDEKRTG KMT
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2f9yB |
| Description: | No description for 2f9yB was found. |
|
Region A: Residues: [678-1373] |
1 11 21 31 41 51
| | | | | |
1 WENVIKQFFT HFDEINGDKM SANLLNFPGF RLSIEDALDK GIRPCGLITG IADFKEKGQK 60
61 VRVGLAVSNT AFQAGAFDMA SAEKFSALLI ECAKRKLPVV CFISSGGMQT KEGAAALFSM 120
121 AVVNDRITRF IRDNELPVLM FGFGDCTGGA QASFVTHPLV QTYYLSGTNM PFAGQMVVPA 180
181 YLPSTSTLSN YLSKVPGAMA GLVHNPFSEN LDNQLASIDP LMPMPTAKIN EVIINALSTL 240
241 VVEAPAEEEE IVQNDPRKLM KPINKVLVHA RGCTAVKLIR KAHDNNINVV LVASDPDMTA 300
301 VPADMLKESD KLVCLGGNTS DESYLNAYSV LKVAEYEQVD ALHPGIGFLS ESPQFAALCV 360
361 NNGVNFVGPS VHSMTTMGNK SNAIKTSQAQ NVPVVPGSHG ILTNAEQAVN VASEIGYPVL 420
421 LKAVQGGGGK GIQVVKRPED MIGLFQKTAT EAAAAFGNGD LYLEKYVTSL RHIEVQLLRD 480
481 KFGHAKVLGL RDCSVQRNNQ KVVEESGSTM LPDELKKQVL AYTRALGDAT DYMGAGTVEF 540
541 IYNLDANEVY FMEMNTRLQV EHPVTEATSG IDIVSAQFDI AAGRSIEHLE PKEIGYAMEV 600
601 RVTAEKAALD SHGVLQLIPN PGKITECVFP DHPDVEIISI AAPGKEVSPY YDSLIAQVIM 660
661 RGENREDVIA KLHAYLDSVV LKGIATNIPL LKLILS
|
| Detection Method: | |
| Confidence: | 90.39794 |
| Match: | 1bxrA |
| Description: | Carbamoyl phosphate synthetase, large subunit connection domain; Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain; Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains; Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| CoA carboxylase activity | 9.83581323285097 | bayes_pls_golite062009 |
| ligase activity, forming carbon-carbon bonds | 9.81059565938621 | bayes_pls_golite062009 |
| acetyl-CoA carboxylase activity | 9.76633430002009 | bayes_pls_golite062009 |
| ligase activity | 7.71401892529536 | bayes_pls_golite062009 |
| biotin carboxylase activity | 6.9547407447638 | bayes_pls_golite062009 |
| carbamoyl-phosphate synthase activity | 4.25267317906061 | bayes_pls_golite062009 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 4.17451795830682 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.45358843752722 | bayes_pls_golite062009 |
| catalytic activity | 2.5009559386228 | bayes_pls_golite062009 |
| phosphoribosylaminoimidazole carboxylase activity | 1.57708889650281 | bayes_pls_golite062009 |
| carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 1.11645327303429 | bayes_pls_golite062009 |
| phosphoribosylamine-glycine ligase activity | 1.04915286326924 | bayes_pls_golite062009 |
| ligase activity, forming carbon-sulfur bonds | 0.695070201354335 | bayes_pls_golite062009 |
|
Region A: Residues: [1374-1517] |
1 11 21 31 41 51
| | | | | |
1 DGTFKEGVYD TNYLPRFMAE LDIPALIAEM EAAAETVGVD TESLRVGESN ELKVLAQGAG 60
61 IFYTSPAPGE PDFVKEGDIV TAEQTLALTE AMKMFSQVNL AGFNRQGAVL YPEDKKYRIE 120
121 RILNSNGQQV SQGDLLFVVS PVED
|
| Detection Method: | |
| Confidence: | 119.0 |
| Match: | 2qf7A |
| Description: | No description for 2qf7A was found. |
