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View Structure Prediction Details

Protein: mys-3
Organism: Caenorhabditis elegans
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mys-3.

Description E-value Query
Range
Subject
Range
mys-3 - zinc finger protein status:Partially_confirmed UniProt:Q21789 protein_id:CAA96668.3
524.0 [0..1] [509..46]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNDQSEIA KRPRTPRPRY SPEAQRRTNS RLSALTIDTN RSNDLNVDGS APSSSSAASC  60
   61 GLSTPDPDRT SQQRRKGNQS AARSRKIKTP SPPLSQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.39794
Match: 1wgsA
Description: Solution Structure of the Tudor Domain from Mouse Hypothetical Protein Homologous to Histone Acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.52947930150666 bayes_pls_golite062009
protein binding 0.79852803292134 bayes_pls_golite062009
chromatin binding 0.59406059827838 bayes_pls_golite062009
transcription regulator activity 0.13486860077524 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [98-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEPMELDSDD DPVNELDNLP IVIDDPSYVL TKEHKEIFEQ VKKSVSDRNE FSPAQISEIY  60
   61 RSSKGEQARL PERIHFGAFI MKTWYGSPFP AEFINVKKLF ICEFCFFYAR SDEIMQNHAK 120
  121 KCMLRAPPGL EIYRKGDISV FEVDGRLQKE YCQTLCLVSR MFLESKTVFY DTEPFFFYIV 180
  181 TINDDIGCHF AGYFSKEKYE PDVNNLSCIM TLPCYQEMGL GRFLIDISYA LSRKEKWFGG 240
  241 PEQPLSELGR KAYGGYWRTT IASCLGRLKD ELEFGSGISI KMIADDTGVN CHDILEVVCS 300
  301 LGWAKPVDPD EKNHYKLEWD VDWDMVSIIL RESEASKETK VQYDPECLDW VPRKMR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 2ozuA
Description: No description for 2ozuA was found.

Predicted Domain #3
Region A:
Residues: [454-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSMDGYHELS KEEIEQDEQR RKSIQKTPVH VSMEKATPTS TTSLPVGSVK KELRSRGHNR  60
   61 SVGRNLKHEV NRKVKVPEWA AARDLTDEEI TVEENKKQQK QNRKIFTRCA GMSERVNIYS 120
  121 SSLEKFVGHF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle