| Protein: | hrp-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hrp-2.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..93] | [596..2] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MSEEIKQEVK EEAPETTTEA KTEEAAPVAE VVAEVVTNGD KPAENGKTEE PSKYAETENY 60
61 KKLIGLKMKP ALADVVCEIY ESGLLGPEDL DDRAVDIINS V
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [102-275] |
1 11 21 31 41 51
| | | | | |
1 NLDQAKFIFT EIKNSELFGV ATKSLYVTSL IRSFKDRCRQ QGAAAVTSGK LINGPELAAL 60
61 KNLLETTGYT IEVTIGQRKF GGPPPDWEGP ATGPAGQGHE IYVGHIPTDV FEDTLVPLFE 120
121 KSGKIWDLRL MMDPMSGASR GYAFVTYCNK EDAAAAAKTY DGHEISTGKP LKVN
|
| Detection Method: | |
| Confidence: | 47.045757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [276-463] |
1 11 21 31 41 51
| | | | | |
1 VSIANTRLFI GNIPKTKSKD EILEELKTHA EGVVDVIVYS VPDNEKIKNR GFCFVDFIDH 60
61 KTASDIKRKI AQHKIRPFNA DVYVDWAEHQ EEPDEDTMSK VKVLYIRNIK EAVTEEKLNE 120
121 LFKEYASLDR VKKVKDYAFI HFNERDDCLK AMEEWNGKEL EGTVVEASLA KPPQEKKKKP 180
181 VMRGRGFG
|
| Detection Method: | |
| Confidence: | 6.38 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [464-611] |
1 11 21 31 41 51
| | | | | |
1 GAGGGAGNHG QRGGQRGGGQ WGGNAGPGGY YPNHFNNGYD MPMPWGGGYG GDMGYGAYGG 60
61 GYGGGYGGPG AYGDFGAYGG GGFRGGMRGS PRGGMGGGGG FRGGPPGRGG MANRRGRGKR 120
121 PGDGRGGPAS KRDNGKPDFS ADVNMSTF
|
| Detection Method: | |
| Confidence: | 7.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
