YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: hrp-2

General Information:
Name(s) found: hrp-2 / CE36388 [WormBase]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • WBGene00002000 locus:hrp-2 status:Confirmed UniProt:Q9NLD1 protein_id:CAB70238.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 611 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: oocyte construction [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEIKQEVK EEAPETTTEA KTEEAAPVAE VVAEVVTNGD KPAENGKTEE PSKYAETENY  60
   61 KKLIGLKMKP ALADVVCEIY ESGLLGPEDL DDRAVDIINS VNLDQAKFIF TEIKNSELFG 120
  121 VATKSLYVTS LIRSFKDRCR QQGAAAVTSG KLINGPELAA LKNLLETTGY TIEVTIGQRK 180
  181 FGGPPPDWEG PATGPAGQGH EIYVGHIPTD VFEDTLVPLF EKSGKIWDLR LMMDPMSGAS 240
  241 RGYAFVTYCN KEDAAAAAKT YDGHEISTGK PLKVNVSIAN TRLFIGNIPK TKSKDEILEE 300
  301 LKTHAEGVVD VIVYSVPDNE KIKNRGFCFV DFIDHKTASD IKRKIAQHKI RPFNADVYVD 360
  361 WAEHQEEPDE DTMSKVKVLY IRNIKEAVTE EKLNELFKEY ASLDRVKKVK DYAFIHFNER 420
  421 DDCLKAMEEW NGKELEGTVV EASLAKPPQE KKKKPVMRGR GFGGAGGGAG NHGQRGGQRG 480
  481 GGQWGGNAGP GGYYPNHFNN GYDMPMPWGG GYGGDMGYGA YGGGYGGGYG GPGAYGDFGA 540
  541 YGGGGFRGGM RGSPRGGMGG GGGFRGGPPG RGGMANRRGR GKRPGDGRGG PASKRDNGKP 600
  601 DFSADVNMST F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..275] PSI-BLAST 47.045757 Poly(A)-binding protein
    3 View Details [276..463] FFAS03 6.38 Poly(A)-binding protein
    4 View Details [464..611] PSI-BLAST 7.154902 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle