| Protein: | let-413 |
| Organism: | Caenorhabditis elegans |
| Length: | 699 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for let-413.
| Description | E-value | Query Range |
Subject Range |
|
|
414.0 | [0..5] | [442..95] |
|
Region A: Residues: [1-373] |
1 11 21 31 41 51
| | | | | |
1 MPAFFCLPMA CQRQVDSIDR SQSNLQAIPS DIFRFRKLED LNLTMNNIKE LDHRLFSLRH 60
61 LRILDVSDNE LAVLPAEIGN LTQLIELNLN RNSIAKLPDT MQNCKLLTTL NLSSNPFTRL 120
121 PETICECSSI TILSLNETSL TLLPSNIGSL TNLRVLEARD NLLRTIPLSI VELRKLEELD 180
181 LGQNELEALP AEIGKLTSLR EFYVDINSLT SLPDSISGCR MLDQLDVSEN QIIRLPENLG 240
241 RMPNLTDLNI SINEIIELPS SFGELKRLQM LKADRNSLHN LTSEIGKCQS LTELYLGQNF 300
301 LTDLPDTIGD LRQLTTLNVD CNNLSDIPDT IGNCKSLTVL SLRQNILTEL PMTIGKCENL 360
361 TVLDVASNKL PHL
|
| Detection Method: |  |
| Confidence: | 44.39794 |
| Match: | 2omxA |
| Description: | No description for 2omxA was found. |
| Term | Confidence | Notes |
| signal transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| molecular transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| receptor activity | 2.44108148686445 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.25077658159974 | bayes_pls_golite062009 |
| protein kinase activity | 1.61450095469422 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.37462680876315 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.36168522830563 | bayes_pls_golite062009 |
| kinase activity | 1.28067810202729 | bayes_pls_golite062009 |
| binding | 1.23313855731605 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.875083054478353 | bayes_pls_golite062009 |
| protein binding | 0.646159692466759 | bayes_pls_golite062009 |
| transferase activity | 0.435331931559158 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.231213253402712 | bayes_pls_golite062009 |
| nucleic acid binding | 0.205944109094333 | bayes_pls_golite062009 |
|
Region A: Residues: [374-427] |
1 11 21 31 41 51
| | | | | |
1 PFTVKVLYKL QALWLSENQT QSILKLSETR DDRKGIKVVT CYLLPQVDAI DGEG
|
| Detection Method: | |
| Confidence: | 27.09691 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [428-564] |
1 11 21 31 41 51
| | | | | |
1 RSGSAQHNTD RGAFLGGPKV HFHDQADTTF EENKEAEIHL GNFERHNTPH PKTPKHKKGS 60
61 IDGHMLPHEI DQPRQLSLVS NHRTSTSSFG ESSNSINRDL ADIRAQNGVR EATLSPEREE 120
121 RMATSLSSLS NLAAGTQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [565-699] |
1 11 21 31 41 51
| | | | | |
1 NMHTIRIQKD DTGKLGLSFA GGTSNDPAPN SNGDSGLFVT KVTPGSAAYR CGLREGDKLI 60
61 RANDVNMINA SQDNAMEAIK KRETVELVVL RRSPSPVSRT SEPSLNGSSH QLNHFDAGSP 120
121 DSTMFVTSST PVYAS
|
| Detection Method: | |
| Confidence: | 10.154902 |
| Match: | 1mfgA |
| Description: | Erbin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.6196222853442 | bayes_pls_golite062009 |
| protein binding | 2.35875654816667 | bayes_pls_golite062009 |
| kinase activity | 1.29833697558449 | bayes_pls_golite062009 |
| transporter activity | 1.18978519116375 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.11584635608743 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07211582292329 | bayes_pls_golite062009 |
| signal transducer activity | 1.06018756723145 | bayes_pls_golite062009 |
| molecular transducer activity | 1.06018756723145 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.851396699088923 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.755223974149211 | bayes_pls_golite062009 |
| PDZ domain binding | 0.71844819286977 | bayes_pls_golite062009 |
| protein domain specific binding | 0.64214865642772 | bayes_pls_golite062009 |
| protein kinase binding | 0.54934142458843 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.549085929250683 | bayes_pls_golite062009 |
| kinase binding | 0.541050170070789 | bayes_pls_golite062009 |
| receptor binding | 0.359972518335054 | bayes_pls_golite062009 |
| transferase activity | 0.325404241870749 | bayes_pls_golite062009 |
| beta-catenin binding | 0.27594880120163 | bayes_pls_golite062009 |
| enzyme binding | 0.265928259068924 | bayes_pls_golite062009 |
| actin binding | 0.263747574646927 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252733105474942 | bayes_pls_golite062009 |
| phosphatase binding | 0.24515474358339 | bayes_pls_golite062009 |
