| Protein: | HFM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1046 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HFM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..1046] | [2..1046] |
|
|
0.0 | [2..1046] | [142..1188] |
|
|
0.0 | [1..829] | [49..883] |
|
|
0.0 | [1..829] | [508..1342] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MQSEAFPSIY ESNENCIISS PTGSGKTVLF ELAILRLIKE TNSDTNNTKI IYIAPTKSLC 60
61 YEMYKNWFPS FVNLSVGMLT SDTSFLETEK AKKCNIIITT PEKWDLLTRR WSDYSRLFEL 120
121 VKLVLVDEIH TIKEKRGASL EVILTRMNTM CQNIRFVALS ATVPNIEDLA LWLKTNNELP 180
181 ANILSFDESY
|
| Detection Method: |  |
| Confidence: | 79.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [191-381] |
1 11 21 31 41 51
| | | | | |
1 RQVQLTKFVY GYSFNCKNDF QKDAIYNSKL IEIIEKHADN RPVLIFCPTR ASTISTAKFL 60
61 LNNHIFSKSK KRCNHNPSDK ILNECMQQGI AFHHAGISLE DRTAVEKEFL AGSINILCST 120
121 STLAVGVNLP AYLVIIKGTK SWNSSEIQEY SDLDVLQMIG RAGRPQFETH GCAVIMTDSK 180
181 MKQTYENLIH G
|
| Detection Method: | |
| Confidence: | 79.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-469] |
1 11 21 31 41 51
| | | | | |
1 TDVLESSLHL NLIEHLAAET SLETVYSIET AVNWLRNTFF YVRFGKNPAA YQEVNRYVSF 60
61 HSVEDSQINQ FCQYLLDTLV KVKIIDIS
|
| Detection Method: | |
| Confidence: | 10.154902 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [470-829] |
1 11 21 31 41 51
| | | | | |
1 NGEYKSTAYG NAMTRHYISF ESMKQFINAK KFLSLQGILN LLATSEEFSV MRVRHNEKKL 60
61 FKEINLSPLL KYPFLTEKKQ SQIIDRVSQK VSLLIQYELG GLEFPSYEGA SKLHQTLVQD 120
121 KFLVFRHCFR LLKCMVDTFI EKSDGTSLKN TLFLLRSLNG HCWENTPMVL RQLKTIGLVS 180
181 VRRLIRHGIT NLEEMGHLSD TQIEYYLNLK IGNGIKIKND ISLLPCLNIR TKLENCKIEN 240
241 EELWLTFKVE ISATFKSSIW HGQHLSLDIE TEKSSGELID FRRLQVNKLQ SPRGFRISAK 300
301 ISPKLEKIEF SIHCQEIAGL GKTIVYSTDH LASQFSAKTP NIRKDLNSLE KCLFYESSSD 360
361
|
| Detection Method: | |
| Confidence: | 97.091515 |
| Match: | PF02889 |
| Description: | Sec63 domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [830-1046] |
1 11 21 31 41 51
| | | | | |
1 GEVGKTSRVS HKDGLEESLS SDDSILDYLN ERKKSSKAVE SAAVIHPEAH SSSHFSNGRQ 60
61 VRSNGNYECF HSCKDKTQCR HLCCKEGIPV KYIKEKGPSS IKPVSKPDQI RQPLLAKNIN 120
121 TTPHLEKRLN SKPKQWQEEN TDIATVHTLP SKIYNLSQQM SSMEAGEQVL KSGPENCPEI 180
181 IPIDLESSDS YSSNTAASSI SDPNGDLDFL GSDIEFE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
