| Protein: | CCD4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 595 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCD4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
656.0 | [0..4] | [594..1] |
|
|
650.0 | [0..1] | [593..19] |
|
|
645.0 | [0..1] | [593..19] |
|
|
635.0 | [0..1] | [594..13] |
|
|
635.0 | [0..1] | [594..13] |
|
|
633.0 | [0..6] | [592..23] |
|
|
628.0 | [0..6] | [593..22] |
|
|
625.0 | [0..6] | [585..12] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL 60
61 HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [101-595] |
1 11 21 31 41 51
| | | | | |
1 SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF 60
61 DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP NVFSGFNGVT ASVARGALTA 120
121 ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL 180
181 AMSMTAHPKT DPITGETFAF RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI 240
241 TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF 300
301 NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA 360
361 RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS KGDRDDCTVA RRMYGSGCYG 420
421 GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY 480
481 GFHGLFVKES DLNKL
|
| Detection Method: | |
| Confidence: | 117.0 |
| Match: | 2biwA |
| Description: | Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme |
Matching Structure (courtesy of the PDB): |
|
