| Protein: | CCD4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 595 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCD4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
656.0 | [0..4] | [594..1] |
|
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650.0 | [0..1] | [593..19] |
|
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645.0 | [0..1] | [593..19] |
|
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635.0 | [0..1] | [594..13] |
|
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635.0 | [0..1] | [594..13] |
|
|
633.0 | [0..6] | [592..23] |
|
|
628.0 | [0..6] | [593..22] |
|
|
625.0 | [0..6] | [585..12] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL 60
61 HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.609 | a.186.1 | Description not found. |
| View | Download | 0.567 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.567 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.546 | a.7.15 | Description not found. |
| View | Download | 0.501 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.471 | a.7.12 | Description not found. |
| View | Download | 0.418 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.381 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.351 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.323 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
|
Region A: Residues: [101-595] |
1 11 21 31 41 51
| | | | | |
1 SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF 60
61 DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP NVFSGFNGVT ASVARGALTA 120
121 ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL 180
181 AMSMTAHPKT DPITGETFAF RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI 240
241 TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF 300
301 NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA 360
361 RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS KGDRDDCTVA RRMYGSGCYG 420
421 GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY 480
481 GFHGLFVKES DLNKL
|
| Detection Method: | |
| Confidence: | 117.0 |
| Match: | 2biwA |
| Description: | Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme |
Matching Structure (courtesy of the PDB): |
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