YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15218016, gi\|...
Organism:	Arabidopsis thaliana
Length:	1729 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15218016, gi|....

Description	E-value	Query Range	Subject Range
gi\|9665127 - gi\|9665127\|gb\|AAF97311.1\|AC007843_14 Hypothetical protein [Arabidopsis thaliana]	1521.0	[0..1]	[1729..1]
gi\|50949946 - gi\|50949946\|emb\|CAH10517.1\| hypothetical protein [Homo sapiens]	1244.0	[0..52]	[1724..117]
TF3C1_MOUSE - General transcription factor 3C polypeptide 1 OS=Mus musculus GN=Gtf3c1 PE=1 SV=2	1223.0	[0..52]	[1724..117]
TF3C1_RAT - General transcription factor 3C polypeptide 1 OS=Rattus norvegicus GN=Gtf3c1 PE=1 SV=1	1221.0	[0..52]	[1724..117]
gi\|115447455, gi... - gi\|50910950\|ref\|XP_466908.1\| transcription factor-like [Oryza sativa (japonica cultivar-group)], gi\|...	1199.0	[0..1]	[1729..1]
gi\|76653147 - gi\|76653147\|ref\|XP_586934.2\| PREDICTED: similar to General transcription factor 3C polypeptide 1 (Tr...	1182.0	[0..52]	[1724..117]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIISTALD EICSQGNTGI PLVTLWSRLS PLSSSIKTHV WRNLLTIPQL QFKTKKNTVY  60
   61 GSSDTSIQNL DDALRLDLRI VANENLRANF VGLYDTQSNN TTIPAIQRRV LERLAIARDN 120
  121 GDAQNLLAKE FGIDGRNFFY SVKQLESRGL IVRQPAIVRT KEVDSKTTSC ITTNMIYLTR 180
  181 YAKPMGSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRFEICKEDS VSEHETTAAG EDTLINDFLP AMQEVCDKLE KANDKVLVIS DIKQDLGYTG  60
   61 SDIRHRAWRS VCRRLIDSHV VEEFDAMVNN KVERCLRLLK RFSAEDFNYS RKKQLIKFGR 120
  121 SVQKTEQTLE LSIDNQIYDM VDAQGSKGLA VMELCERLGI DKKKIYARLC SICSRVGMHL 180
  181 QAESHKKTRV FRLWTSRHAR SKSSDKFPDK AENIRGEDND SSTPHGTDGL AKTKTTMEHS 240
  241 TAISDADFST TPASVT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [445-663]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSERNSGAKR RKVPTRRNLQ ESFNEIGEKV VNAAKGSPDL PKSAKSKVQQ PHATIENSRR  60
   61 EHRILERLKE EKFVLRVEFH KWLLTFEKDR SPKVDRKTIY RILDRRQDKG LCKCVGIRVP 120
  121 NVNDCDRSRC SVIVLHPSVQ RLTRDIGNEI HDRIRSFELG FRSQRSSKRE SDKTVPVLND 180
  181 VQRAIRASKS GAMRAKGVVL AKMFRVKLLH CFLWDYFSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [664-835]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPGWDSASSS IHHHISKNLF SLKDAFRAMP LQLFLQVVGS TQKADDIMKK YKQVMRLSEL  60
   61 PSEEYKLLMD TRVIGILSML INILRRLKLI QMVSDRLRRD KIEKYANLTH AMELKPYIEE 120
  121 PVFVAAKFDV TSLDFRPRIR HDFILSNRDA VDEYWLTLEY CYAASDHEAA KQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [836-1052]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFPGSVSQEV FGVRSWASDH VMTAEQRAKL LQCIDEKAKL SFKECEKFAK DLNLTIEQVM  60
   61 HVYHAKHGRR VKSNSKDKNK AVENSPSSSK KRKRASLVKT KGEGVKSIIV DGQKVLNSDA 120
  121 IDASNSESFQ DSLQDDQTPI QMHRQEHAEI SNLTEDEPQC SNIINRHASS KTRSLPSQRF 180
  181 TWTDEADRKL LSKYARHRAA LGAKFHGVNW ASVQELP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [1053-1132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPLPCKRRI QTMMRNDKVR KAVMRLCNLL SERYAKHLKT ESDSVEHRKD EGKWDDFNEK  60
   61 SISQAFNNVL ELKKMGKLMP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [1133-1392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQRTRPEIHT EDIQTVSIDQ VKDTSRLHQI FKHVDEKDNG CIQVQESLVV STAVELLKLV  60
   61 FLSMPTAPSM PNLLEDTLRR YSEGDLFTAY SYLRDKKFLV GGSDGQPFVL SQNFLHSISK 120
  121 SPFPVNTGKR AAKFSSWLVE HERELMDEGV TLTSDLQCGD VLNFFSLVAS GELSLSVSLP 180
  181 EEGVGEPEHR RGLKRRAEDV EESELDSAKK FKLLGEGEIN VRKEKGFPGL AVSVHRVTIP 240
  241 IANAIELFKD DDSWSGELHF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1393-1610]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGETNNGCG SDDMKELLDS KDATVIPGSL VDSPWQAMAS VASCIMSGSA EEQQSLISPE  60
   61 VFEAVSNALH KAGDQGLSIE EVHFLINIPS QETCDCIVEV LQTFGVALKV NGYDNFRLVH 120
  121 SLYRSKYFLT LADGGTTQNG QQSQPANYVE KALEEHRSND VVTSDYSTSK DKQVHVSENS 180
  181 VHKVTILNIP EMAETSGLQE ESTKAPSVTF GTSIEGET

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1611-1729]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESTSVKSQP IFPWINADGS VNKVVFDGLV RRVLGTVMQN PGIPEEEIIN QMDVLNPQSC  60
   61 RKLLELMTLD GYMKVREMVQ TKFSGPPSLL TGLLFTGHRK TELISRKHFF ANSKGLFAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits