| Protein: | VPS9A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 520 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS9A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
422.0 | [0..139] | [520..3] |
|
|
378.0 | [0..6] | [438..15] |
|
|
337.0 | [0..11] | [511..6] |
|
|
321.0 | [0..1] | [348..472] |
|
|
315.0 | [0..10] | [494..38] |
|
|
314.0 | [0..24] | [497..146] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA 60
61 FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE EVIADEKLFQ KMSLVQQFIS 120
121 PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN 180
181 APGADEFLPV LIYVTIKANP PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI 240
241 DAKSISLDEA EFEKNMESA
|
| Detection Method: |  |
| Confidence: | 70.30103 |
| Match: | 1txuA |
| Description: | Crystal Structure of the Vps9 Domain of Rabex-5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [260-343] |
1 11 21 31 41 51
| | | | | |
1 RARISGLDSQ TYQTGHGSAP PPRDESTLQK TQSLNPKREN TLFQSKSSDS LSGTNELLNI 60
61 NSETPMKKAE SISDLENKGA TLLK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.382 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.355 | a.3.1 | Cytochrome c |
| View | Download | 0.353 | a.3.1 | Cytochrome c |
| View | Download | 0.352 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.352 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.344 | a.118.1 | ARM repeat |
| View | Download | 0.338 | a.3.1 | Cytochrome c |
| View | Download | 0.338 | a.3.1 | Cytochrome c |
| View | Download | 0.305 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
|
Region A: Residues: [344-520] |
1 11 21 31 41 51
| | | | | |
1 DTEPSKVFQE YPYIFASAGD LRIGDVEGLL NSYKQLVFKY VCLTKGLGDG TSLAPSSSPL 60
61 QASSGFNTSK ESEDHRRSSS DVQMTKETDR SVDDLIRALH GEGEDVNNLS DVKHEEYGAM 120
121 LVEGKDEERD SKVQGEVDAK DIELMKQIPK REGDNSSSRP AEDEDVGSKQ PVTEASE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
