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View Structure Prediction Details

Protein: CCT11_ARATH
Organism: Arabidopsis thaliana
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCT11_ARATH.

Description E-value Query
Range
Subject
Range
gi|1752809 - gi|1752809|dbj|BAA14010.1| cyclin A [Asterina pectinifera]
225.0 [0..2] [246..193]

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Predicted Domain #1
Region A:
Residues: [1-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV  60
   61 LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV VFVSYRVLFN KEPLRDVFER 120
  121 LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS 180
  181 LCLQFGPSQI ASAAIYIGLS MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF 240
  241 VVPRHGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.221849
Match: 2pk2A
Description: No description for 2pk2A was found.

Predicted functions:

Term Confidence Notes
general RNA polymerase II transcription factor activity 4.69539052135726 bayes_pls_golite062009
transcription regulator activity 2.795846725429 bayes_pls_golite062009
binding 2.4204867358489 bayes_pls_golite062009
nucleic acid binding 2.04886889839181 bayes_pls_golite062009
cyclin-dependent protein kinase regulator activity 1.98373193969564 bayes_pls_golite062009
DNA binding 1.94297811210385 bayes_pls_golite062009
protein kinase regulator activity 1.69725593301329 bayes_pls_golite062009
kinase regulator activity 1.65109787211976 bayes_pls_golite062009
protein binding 1.47106731485576 bayes_pls_golite062009
transcription factor activity 1.21921365719206 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.09952334871968 bayes_pls_golite062009
transcription factor binding 0.749278791251235 bayes_pls_golite062009
enzyme regulator activity 0.729629809946521 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.36347576272001 bayes_pls_golite062009
transcription coactivator activity 0.138191616709499 bayes_pls_golite062009
transcription activator activity 0.0696060248241566 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle