YRC Public Data Repository - Protein Structure Prediction

Protein:	AGD6_ARATH
Organism:	Arabidopsis thaliana
Length:	459 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGD6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|10441356 - gi\|10441356\|gb\|AAG17006.1\|AF184146_1 ARF GAP-like zinc finger-containing protein ZIGA2 [Arabidopsis ...	261.0	[0..1]	[451..1]
gi\|76573333 - gi\|76573333\|gb\|ABA46771.1\| unknown [Solanum tuberosum]	220.0	[0..1]	[459..1]
gi\|84453190, gi\|... - gi\|84468406\|dbj\|BAE71286.1\| putative Asp1 [Trifolium pratense], gi\|84453190\|dbj\|BAE71192.1\| putative...	218.0	[0..1]	[459..1]
gi\|108707489, gi... - gi\|215697749\|dbj\|BAG91743.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125585794\|gb\|...	211.0	[0..3]	[458..5]
gi\|74275397 - gi\|74275397\|gb\|ABA02183.1\| ADP-ribosylation factor GTPase activating protein 1 heart isoform [Rattus...	205.0	[0..3]	[458..6]
gi\|87240335, gi\|... - gi\|87240335\|gb\|ABD32193.1\| Arf GTPase activating protein [Medicago truncatula], gi\|217074462\|gb\|ACJ8...	200.0	[0..1]	[420..1]
gi\|62898415 - gi\|62898415\|dbj\|BAD97147.1\| ADP-ribosylation factor GTPase activating protein 1 isoform a variant [H...	199.0	[0..3]	[435..6]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT  60
   61 MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN SNAASVYRDR IQALAEGRPW 120
  121 NDPPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	2iqjA
Description:	No description for 2iqjA was found.

Predicted Domain #2

Region A:
Residues: [126-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKEANKKPPL AQGGYGNNNN NNNGGWDSWD NDDSYKSDMR RNQSANDFRA SGNREGAHVK  60
   61 SKSSEDIYTR SQLEASAAGK ESFFARRMAE NESKPEGLPP SQGGKYVGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [236-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSAPPPRNN QQDDVFSVVS QGFGRLSLVA ASAAQSAASV VQTGTKEFTS KVKEGGYDHK  60
   61 VSETVNVVAN KTTEIGHRTW GIMKGVMAMA TQKVEEFTKE GSTSWNQQSE NEGNGYYQNF 120
  121 GNGNKAANSS VGGGRPQSSS TSGHYNNSQN SNSWDSWGEN ENKKTEAVAP KGSSASNDDD 180
  181 GWTGWDDHDA KDDGFDGHYQ SAGDKKSAGH NGKSDTAWTG GGFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits