| Protein: | ATG4B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 477 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG4B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
566.0 | [0..1] | [445..1] |
|
|
516.0 | [0..1] | [477..1] |
|
|
509.0 | [0..1] | [468..272] |
|
|
495.0 | [0..102] | [477..102] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MKAICDRFVP SKCSSSSTSE KRDISSPTSL VSDSASSDNK SNLTLCSDVV ASSSPVSQLC 60
61 REASTSGHNP VCTTHSSWTV ILKTASMASG AIRRFQDRVL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.674 | a.60.8 | HRDC-like |
| View | Download | 0.469 | a.28.1 | ACP-like |
| View | Download | 0.366 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.313 | a.60.14 | Description not found. |
| View | Download | 0.306 | a.69.4 | Description not found. |
| View | Download | 0.263 | a.118.8 | TPR-like |
| View | Download | 0.253 | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| View | Download | 0.251 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.216 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.205 | d.26.1 | FKBP-like |
| View | Download | 0.201 | b.1.18 | E set domains |
|
Region A: Residues: [101-477] |
1 11 21 31 41 51
| | | | | |
1 GPSRTGISSS TSEIWLLGVC YKISEGESSE EADAGRVLAA FRQDFSSLIL MTYRRGFEPI 60
61 GDTTYTSDVN WGCMLRSGQM LFAQALLFQR LGRSWRKKDS EPADEKYLEI LELFGDTEAS 120
121 AFSIHNLILA GESYGLAAGS WVGPYAVCRS WESLARKNKE ETDDKHKSFS MAVHIVSGSE 180
181 DGERGGAPIL CIEDVTKTCL EFSEGETEWP PILLLVPLVL GLDRVNPRYI PSLIATFTFP 240
241 QSLGILGGKP GASTYIVGVQ EDKGFYLDPH DVQQVVTVKK ENQDVDTSSY HCNTLRYVPL 300
301 ESLDPSLALG FYCQHKDDFD DFCIRATKLA GDSNGAPLFT VTQSHRRNDC GIAETSSSTE 360
361 TSTEISGEEH EDDWQLL
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| Detection Method: | |
| Confidence: | 139.0 |
| Match: | 2d1iA |
| Description: | Structure of human Atg4b |
Matching Structure (courtesy of the PDB): |
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