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Protein Overview: ATG4B_ARATH

General Information:
Name(s) found: ATG4B_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: autophagy [ISS]
    Molecular Function: peptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAICDRFVP SKCSSSSTSE KRDISSPTSL VSDSASSDNK SNLTLCSDVV ASSSPVSQLC  60
   61 REASTSGHNP VCTTHSSWTV ILKTASMASG AIRRFQDRVL GPSRTGISSS TSEIWLLGVC 120
  121 YKISEGESSE EADAGRVLAA FRQDFSSLIL MTYRRGFEPI GDTTYTSDVN WGCMLRSGQM 180
  181 LFAQALLFQR LGRSWRKKDS EPADEKYLEI LELFGDTEAS AFSIHNLILA GESYGLAAGS 240
  241 WVGPYAVCRS WESLARKNKE ETDDKHKSFS MAVHIVSGSE DGERGGAPIL CIEDVTKTCL 300
  301 EFSEGETEWP PILLLVPLVL GLDRVNPRYI PSLIATFTFP QSLGILGGKP GASTYIVGVQ 360
  361 EDKGFYLDPH DVQQVVTVKK ENQDVDTSSY HCNTLRYVPL ESLDPSLALG FYCQHKDDFD 420
  421 DFCIRATKLA GDSNGAPLFT VTQSHRRNDC GIAETSSSTE TSTEISGEEH EDDWQLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..477] PSI-BLAST 139.0 Structure of human Atg4b


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle