| Protein: | RRP41_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 241 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP41_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
267.0 | [0..2] | [236..318] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MEYVNPEGLR LDGRRFNEMR QIVAEVGVVS KADGSAVFEM GNTKVIAAVY GPREIQNKSQ 60
61 QKKNDHAVVL CEYSMAQFST GDRRRQKFDR RSTELSLVIR QTMEACILTE LMPHSQIDIF 120
121 LQVLQADGGT RSACINAATL ALADAGIPMR DLAVSCSAGY LNSTPLLDLN YVEDSAGGAD 180
181 VTVGILPKLD KVSLLQMDAK LPMETFETVF ALASEGCKAI AERIREVLQE NTKQLEYRRA 240
241 A
|
| Detection Method: |  |
| Confidence: | 65.09691 |
| Match: | 2br2B |
| Description: | RNase PH core of the archaeal exosome |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| exoribonuclease activity | 7.55877202113513 | bayes_pls_golite062009 |
| ribonuclease activity | 7.54644729272203 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 7.5310318714913 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 6.46930372693262 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 4.29895100594643 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 3.83939403332553 | bayes_pls_golite062009 |
| exonuclease activity | 3.40686901061667 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.86434572018929 | bayes_pls_golite062009 |
| RNA binding | 2.05527376734941 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.90115575554186 | bayes_pls_golite062009 |
| structural molecule activity | 1.69321127364043 | bayes_pls_golite062009 |
| hydrolase activity | 1.55476709794855 | bayes_pls_golite062009 |
| binding | 1.3018457178158 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20748032530392 | bayes_pls_golite062009 |
| mRNA binding | 1.17402119891853 | bayes_pls_golite062009 |
| nucleic acid binding | 1.05662964529454 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| DNA binding | 0.828609700556836 | bayes_pls_golite062009 |
| nuclease activity | 0.69721312877891 | bayes_pls_golite062009 |
| carbohydrate kinase activity | 0.51810239718467 | bayes_pls_golite062009 |
| tRNA-specific ribonuclease activity | 0.383567539949931 | bayes_pls_golite062009 |
| ATP-dependent peptidase activity | 0.1173709890655 | bayes_pls_golite062009 |
| protein binding | 0.0913090112555771 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0287026367466632 | bayes_pls_golite062009 |
